| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,991,442 – 19,991,536 |
| Length | 94 |
| Max. P | 0.523217 |
| Location | 19,991,442 – 19,991,536 |
|---|---|
| Length | 94 |
| Sequences | 13 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 66.08 |
| Shannon entropy | 0.74791 |
| G+C content | 0.48275 |
| Mean single sequence MFE | -27.67 |
| Consensus MFE | -11.10 |
| Energy contribution | -11.33 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.71 |
| Mean z-score | -0.73 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.523217 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19991442 94 - 27905053 UGGCUGAUCCAAGUCGA------UCUCAAA---GGUCUUACUGCUAUUGGG-----UUUGUGCUCCAUGUACUUCAUGGAGUAGUCAAUGGGCUGCUCUUCAGUGGGU (.(((((....((((.(------((((((.---(((......))).)))))-----....(((((((((.....)))))))))....)).)))).....))))).).. ( -28.60, z-score = -1.13, R) >droGri2.scaffold_14906 9679899 106 + 14172833 GGGUUGAUCCAAGUCAAUGGAGUUAUCGAAACUGGGCUUAUCCGGCUUGUGCUC--GCUGUAGCUGCUGUACUUCAUGGAAUAGUCAAUGGGCUGUUCCUCUGCGGGG ..((((((....)))))).((((...(((..(((((....))))).))).))))--.((((((....((.....)).(((((((((....))))))))).)))))).. ( -29.30, z-score = 0.53, R) >droMoj3.scaffold_6540 7437546 103 - 34148556 GAGCUGAUCUAAGUCGAUGGAAUUGUCAAAACUGGUCUUAGCCGGCUUGUGCUC--GUUAUA---GCUGUACUUCAUCGAAUAGUCAAUGGGCUGCUCCUCCGUGGGU ((((.........((((((((..........(((((....)))))...((((..--((....---)).))))))))))))..((((....)))))))).......... ( -24.60, z-score = 0.66, R) >droVir3.scaffold_13047 10226913 103 - 19223366 GGGCUGAUCCAAAUCCGUCUCUUGAUAUGUUGUUGUCUUGCUGCUGUUGGC-----AGCACCUUCGCUAUAUUUGGCAGAAUAAUCAAUGGGCUGCUCCUCAGUGGCC ((((.(((....))).))))...((((......))))..((..(((..(((-----(((.((...((((....)))).((....))...))))))))...)))..)). ( -31.10, z-score = -0.95, R) >droWil1.scaffold_181089 9460400 100 + 12369635 CGGCUGAUCCAAGUCGA------UUUCAAA--GCGUUUUGCAGUGGUUGGAGGUGCCUUAUGCUCUACAUAUUUCAUUGAGUAGUCAAUUGGCUGCUCUUCUGUUGGU (((((......))))).------......(--((((...(((..(((.......)))...)))...))..........((((((((....))))))))....)))... ( -25.70, z-score = -0.18, R) >droPer1.super_0 5930013 91 + 11822988 GGGCUGAUCCAAGUCGA------UCUCGAAAGUCUUGGUGUCCGGCUUAUGCUC-----------CAUGUACUUCAUGGAGUAGUCAAUGGGUUGCUCCUCCGUGGGC ((((((((((((((((.------...)))....))))).)).)))))).(((((-----------((((.....)))))))))(((.(((((.......))))).))) ( -31.20, z-score = -1.61, R) >dp4.chr2 14528090 91 - 30794189 GGGCUGAUCCAAGUCGA------UCUCGAAAGUCUUGGUGUCCGGCUUAUGCUC-----------CAUGUACUUCAUGGAGUAGUCAAUGGGUUGCUCCUCCGUGGGC ((((((((((((((((.------...)))....))))).)).)))))).(((((-----------((((.....)))))))))(((.(((((.......))))).))) ( -31.20, z-score = -1.61, R) >droAna3.scaffold_13340 1193667 94 + 23697760 GGGUUGGUCUAAAUCUA------UCUCGAA---CGGCUUACUGCUAUUAGG-----UUUAUGCUCCAUGUACUUCAUGGAGUAGUCGAUGGGCUGCUCCUCCGUCGGC (((.(((.......)))------.)))...---.(((.....)))......-----....(((((((((.....)))))))))(((((((((.......))))))))) ( -29.40, z-score = -1.71, R) >droEre2.scaffold_4820 2403918 94 + 10470090 UGGCUGAUCCAAGUCGA------UCUCAAA---GGUCUUACUGCUAUUGGG-----UUUGUGCUCCAUGUAUUUCAUGGAGUAGUCAAUGGGCUGCUCUUCUGUGGGU .((((......))))((------((.....---))))...(..(....(((-----(....((((((((.....))))))))((((....))))))))....)..).. ( -27.50, z-score = -1.17, R) >droYak2.chr3R 2320606 94 + 28832112 UGGCUGAUCCAAGUCGA------UCUCAAA---GGUCUUACUGCUAUUGGG-----UUUGUGCUCCAUGUACUUCAUGGAGUAGUCAAUGGGCUGCUCUUCUGUGGGU .((((......))))((------((.....---))))...(..(....(((-----(....((((((((.....))))))))((((....))))))))....)..).. ( -27.50, z-score = -0.96, R) >droSec1.super_0 20329358 94 - 21120651 UGGCUGAUCCAAGUCGA------UCUCAAA---GGUCUUACUGCUAUUGGG-----UUUGUGCUCCAUGUACUUCAUGGAGUAGUCAAUGGGCUGCUCUUCAGUGGGU (.(((((....((((.(------((((((.---(((......))).)))))-----....(((((((((.....)))))))))....)).)))).....))))).).. ( -28.60, z-score = -1.13, R) >droSim1.chr3R 19824937 94 - 27517382 UGGCUGAUCCAAGUCGA------UCUCAAA---GGUCUUACUGCUAUUGGG-----UUUGUGCUCCAUGUACUUCAUGGAGUAGUCAAUGGGCUGCUCUUCAGUGGGU (.(((((....((((.(------((((((.---(((......))).)))))-----....(((((((((.....)))))))))....)).)))).....))))).).. ( -28.60, z-score = -1.13, R) >apiMel3.GroupUn 38511983 101 - 399230636 CGGUUGAUCCAAAUCGG-----UCACGGCAUAAUCACUAAACAAAGUUCCUUCU--GUUCGAUGGUUUACAGUUGGUGAAAUAGUUUGUUGUAUACUAUUCAAUGAAU .(..((((....)))).-----.)((((((...(((((((........((.((.--....)).)).......))))))).......))))))................ ( -16.36, z-score = 0.86, R) >consensus GGGCUGAUCCAAGUCGA______UCUCAAA___GGUCUUACUGCUAUUGGG_____UUUGUGCUCCAUGUACUUCAUGGAGUAGUCAAUGGGCUGCUCUUCAGUGGGU (((((......))))).............................................................(((((((((....)))))))))......... (-11.10 = -11.33 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:39:56 2011