| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,982,951 – 19,983,043 |
| Length | 92 |
| Max. P | 0.986597 |
| Location | 19,982,951 – 19,983,043 |
|---|---|
| Length | 92 |
| Sequences | 12 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 81.26 |
| Shannon entropy | 0.36175 |
| G+C content | 0.42007 |
| Mean single sequence MFE | -27.42 |
| Consensus MFE | -22.53 |
| Energy contribution | -21.56 |
| Covariance contribution | -0.97 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.24 |
| SVM RNA-class probability | 0.986597 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19982951 92 - 27905053 ---------AUAGGAAUGCCGAUUUGGCAUUCCCUUCACUGGUCGUAGGCAUUUGUGGAGUUUAUAUCGUGUCGUAAGCA--UUGCAUG--AUUUA-CCUAAUUUA--------- ---------...((((((((.....))))))))((((((..((.....))....))))))..((.((((((((....)..--..)))))--)).))-.........--------- ( -25.90, z-score = -2.00, R) >droGri2.scaffold_14906 9671344 96 + 14172833 -------CUGUAGGAGUGCCGUUUCGGCAUUCCCUUCACGGGCCGUAGGCAUUUGUGGAGUUUAUAUCGUGCCGUAAGCA--UUGCAUG-UUGUUCUUCUUAUUUA--------- -------.....(((((((((...)))))))))(((((((.(((...)))...)))))))...(((.((((((....)..--..)))))-.)))............--------- ( -28.90, z-score = -2.01, R) >droMoj3.scaffold_6540 7429068 112 - 34148556 UAUAUUUACAUAGGAGUGCCGUUUUGGCAUUCCCUUCACGGGCCGUAGGCAUUUGUGGAGUUUAUAUCGCGUUGUAAGCA--UUGCAUG-UUCUUAUUCCCACUCUCAUACCCAA ............((((((((.....))))))))......(((..(((((.((.((..(.(((((((......))))))).--)..)).)-).))))).))).............. ( -30.90, z-score = -2.05, R) >droVir3.scaffold_12822 1127859 101 + 4096053 --UAUAUAUGUAGGAGUGCCGUUUCGGCAUUCCCUUCACGGGCCGUAGGCAUUUGUGGAGUUUAUAUCGUGUCGUAAGCA--UUGCAUG-UUCUUACUCCCACUCA--------- --..........(((((((((...)))))))))......(((..(((((.((.((..(.((((((........)))))).--)..)).)-).))))).))).....--------- ( -31.70, z-score = -2.54, R) >droWil1.scaffold_181130 7165878 101 - 16660200 -------CUAUAGGAAUGCCGUUUUGGUAUUCCUUUCACGGGUCGUAGACAUCUGUGGAGUUUAUAUCGUGUUGUAAGCAUGUUGCAUGUUGCUUCUUUUAAUUUUGA------- -------....(((((((((.....)))))))))(((((((((.(....))))))))))(((((((......))))))).....((.....))...............------- ( -26.60, z-score = -2.26, R) >droPer1.super_0 5920952 97 + 11822988 -------UCGUAGGAGUGCCGCUUUGGCAUUCCCUUCACUGGUCGUAGGCACUUGUGGAGUUUAUACCGUGUUGUAAGCA--UUCCAUUUUGUUUCCACUGUUUUA--------- -------.....((((((((.....))))))))...((.(((....(((((...((((((((((((......))))))).--.)))))..)))))))).)).....--------- ( -26.50, z-score = -1.67, R) >dp4.chr2 14519305 97 - 30794189 -------UCGUAGGAGUGCCGCUUUGGCAUUCCCUUCACUGGCCGUAGGCACUUGUGGAGUUUAUACCGUGUUGUAAGCA--UUCCAUUUUGUUUCCACUGUUUUA--------- -------..(((((((((((.....))))))))((((((..(((...)))....))))))....))).(((....(((((--........))))).))).......--------- ( -26.90, z-score = -1.58, R) >droAna3.scaffold_13340 1185125 94 + 23697760 ----------UAGGAGUGCCGAUUCGGUAUUCCCUUUACAGGCCGUAGGCACUUGUGGAGUUUAUAUCGUGUUGUAAGCA--UUGCACAUUUUUUUCUCUAAUUUA--------- ----------..(((((((((...)))))))))(((((((((((...))).).)))))))........((((((....))--..))))..................--------- ( -24.80, z-score = -1.99, R) >droEre2.scaffold_4820 2395414 93 + 10470090 ---------AUAGGAAUGCCGAUUUGGCAUUCCGUUCACUGGUCGUAGGCAUUUGUGGAGUUUAUAUCGUGUCGUAAGCA--UUGCAUG--AUUUCUUCUAAUUUA--------- ---------...((((((((.....))))))))((..((.....))..))......((((.....((((((((....)..--..)))))--))..)))).......--------- ( -24.90, z-score = -1.82, R) >droYak2.chr3R 2312163 93 + 28832112 ---------AUAGGAAUGCCGAUUUGGCAUUCCCUUCACUGGUCGUAGGCAUUUGUGGAGUUUAUAUCGUGUCGUAAGCA--UUGCAUG--AUUUAUUCUAAUUUA--------- ---------...((((((((.....))))))))((((((..((.....))....))))))..((.((((((((....)..--..)))))--)).))..........--------- ( -26.00, z-score = -2.23, R) >droSec1.super_0 20320859 93 - 21120651 ---------AUAGGAAUGCCGAUUUGGCAUUCCCUUCACUGGUCGUAGGCAUUUGUGGAGUUUAUAUCGUGUCGUAAGCA--UUGCAUG--AUUUAUUCUAAUUUA--------- ---------...((((((((.....))))))))((((((..((.....))....))))))..((.((((((((....)..--..)))))--)).))..........--------- ( -26.00, z-score = -2.23, R) >droSim1.chr3R 19816492 93 - 27517382 ---------AUAGGAAUGCCGAUUUGGCAUUCCCUUCACUGGUCGUAGGCAUUUGUGGAGUUUAUAUCGUGUCGUAAGCA--UUGCAUG--AUAUAUUCUAAUUUA--------- ---------...((((((((.....))))))))((((((..((.....))....))))))..(((((((((((....)..--..)))))--)))))..........--------- ( -29.90, z-score = -3.38, R) >consensus _________AUAGGAAUGCCGAUUUGGCAUUCCCUUCACUGGUCGUAGGCAUUUGUGGAGUUUAUAUCGUGUCGUAAGCA__UUGCAUG_UAUUUAUUCUAAUUUA_________ ............(((((((((...))))))))).(((((..(((...)))....)))))((((((........)))))).................................... (-22.53 = -21.56 + -0.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:39:55 2011