| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,978,635 – 19,978,692 |
| Length | 57 |
| Max. P | 0.950287 |
| Location | 19,978,635 – 19,978,692 |
|---|---|
| Length | 57 |
| Sequences | 5 |
| Columns | 57 |
| Reading direction | forward |
| Mean pairwise identity | 90.51 |
| Shannon entropy | 0.16783 |
| G+C content | 0.37820 |
| Mean single sequence MFE | -10.84 |
| Consensus MFE | -9.96 |
| Energy contribution | -9.96 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.17 |
| SVM RNA-class probability | 0.904031 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19978635 57 + 27905053 GGUUUGAAGGGUUGCUAUAACUUCAACCCCUGAACCGUUUUUCUUUUAAUAUUUUCG (((((...((((((.........))))))..)))))..................... ( -12.30, z-score = -2.27, R) >droSim1.chr3R 19812146 57 + 27517382 GGUUUGAAGGGUUGCUAUAACUUCAACCCCUGUACCACUUUUCUUUUACAAUUUUCU (((.....((((((.........))))))....)))..................... ( -10.20, z-score = -1.38, R) >droSec1.super_0 20316526 57 + 21120651 GGUUUGAAGGGUUGCUAUAACUUCAACCCCUGUACCACUUUUCUUUUACAAUUUUCU (((.....((((((.........))))))....)))..................... ( -10.20, z-score = -1.38, R) >droYak2.chr3R 2307796 56 - 28832112 GGUUUGAAGGGUUGCU-UAACUUCAACCCCUGUACCUUUUUUCUGUUACCAUUUUCG (((.....((((((..-......))))))....)))..................... ( -10.50, z-score = -1.44, R) >droEre2.scaffold_4820 2391089 56 - 10470090 GGUUUAAAGGGUUGCU-UAACUUCAACCCCUGUACCGUUUUUCUUUUACCAUUUUUG (((.....((((((..-......))))))....)))..................... ( -11.00, z-score = -1.90, R) >consensus GGUUUGAAGGGUUGCUAUAACUUCAACCCCUGUACCAUUUUUCUUUUACAAUUUUCG (((.....((((((.........))))))....)))..................... ( -9.96 = -9.96 + -0.00)
| Location | 19,978,635 – 19,978,692 |
|---|---|
| Length | 57 |
| Sequences | 5 |
| Columns | 57 |
| Reading direction | reverse |
| Mean pairwise identity | 90.51 |
| Shannon entropy | 0.16783 |
| G+C content | 0.37820 |
| Mean single sequence MFE | -11.86 |
| Consensus MFE | -11.36 |
| Energy contribution | -11.36 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.56 |
| SVM RNA-class probability | 0.950287 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19978635 57 - 27905053 CGAAAAUAUUAAAAGAAAAACGGUUCAGGGGUUGAAGUUAUAGCAACCCUUCAAACC .....................((((.((((((((.........))))))))..)))) ( -12.40, z-score = -2.25, R) >droSim1.chr3R 19812146 57 - 27517382 AGAAAAUUGUAAAAGAAAAGUGGUACAGGGGUUGAAGUUAUAGCAACCCUUCAAACC .....................(((..((((((((.........))))))))...))) ( -11.20, z-score = -1.34, R) >droSec1.super_0 20316526 57 - 21120651 AGAAAAUUGUAAAAGAAAAGUGGUACAGGGGUUGAAGUUAUAGCAACCCUUCAAACC .....................(((..((((((((.........))))))))...))) ( -11.20, z-score = -1.34, R) >droYak2.chr3R 2307796 56 + 28832112 CGAAAAUGGUAACAGAAAAAAGGUACAGGGGUUGAAGUUA-AGCAACCCUUCAAACC .....................(((..((((((((......-..))))))))...))) ( -12.20, z-score = -1.72, R) >droEre2.scaffold_4820 2391089 56 + 10470090 CAAAAAUGGUAAAAGAAAAACGGUACAGGGGUUGAAGUUA-AGCAACCCUUUAAACC .....................(((..((((((((......-..))))))))...))) ( -12.30, z-score = -1.84, R) >consensus CGAAAAUGGUAAAAGAAAAACGGUACAGGGGUUGAAGUUAUAGCAACCCUUCAAACC .....................(((..((((((((.........))))))))...))) (-11.36 = -11.36 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:39:54 2011