| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,974,568 – 19,974,623 |
| Length | 55 |
| Max. P | 0.982003 |
| Location | 19,974,568 – 19,974,623 |
|---|---|
| Length | 55 |
| Sequences | 8 |
| Columns | 56 |
| Reading direction | forward |
| Mean pairwise identity | 68.78 |
| Shannon entropy | 0.63593 |
| G+C content | 0.40841 |
| Mean single sequence MFE | -11.03 |
| Consensus MFE | -5.88 |
| Energy contribution | -5.67 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.67 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.09 |
| SVM RNA-class probability | 0.982003 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19974568 55 + 27905053 UACACGUUUUCUUUGCCGAAAGGCAGU-GUUUUAAUACACUUCGCAGGCUCAACAU .....((((.(..((((....))))((-((......))))...).))))....... ( -13.10, z-score = -2.44, R) >droSim1.chr3R 19807906 55 + 27517382 UGCACGUUUUCUUGGCCGAAAGGCAGU-GUUUUAAUACACUUCGCAAGCUCAACAU .....(((..(((((((....)))(((-((......)))))...))))...))).. ( -16.00, z-score = -2.69, R) >droSec1.super_0 20312467 55 + 21120651 UGCACGUUUUCUUGGCCGAAAGGCAGU-GUUUUAAUACACUUCGCAACCUCAACAU (((...........(((....)))(((-((......)))))..))).......... ( -15.10, z-score = -2.82, R) >droYak2.chr3R 2303734 55 - 28832112 UGCACGUUUUCCUUGCCGAAAGGCAGU-UUUUUAAUACAUUUCGUAAGCACAACAU (((.........(((((....))))).-.......(((.....))).)))...... ( -12.00, z-score = -2.47, R) >droEre2.scaffold_4820 2386882 55 - 10470090 UGCACGUUUUCUUGGCCGAAAGGCACU-UUUUUAAUAUCUUUCGUAAACUCAACAU (((.((......))(((....)))...-...............))).......... ( -8.10, z-score = -1.16, R) >dp4.chr2 14508024 55 + 30794189 UGGAACCCUUUUGAGCCGCACGGCAGC-UUCUUAAAACAAUUUGAAGGCCUAACAU .((...........(((....)))..(-(((............)))).))...... ( -8.40, z-score = 0.55, R) >droPer1.super_0 5909785 55 - 11822988 UGGAACCCUUUUGAGCCGCACGGCAGC-UUCUUAAAACAAUUUGAAGACCUAACAU .((...........(((....)))..(-(((............)))).))...... ( -8.50, z-score = -0.60, R) >triCas2.ChLG3 24464666 50 + 32080666 UACGCUUUUUCUCCUGUGUAAGGAUGUAUUUUCUAUACAAAACGUCAGAU------ .(((.......((((.....))))(((((.....)))))...))).....------ ( -7.00, z-score = -0.71, R) >consensus UGCACGUUUUCUUGGCCGAAAGGCAGU_UUUUUAAUACAAUUCGCAAGCUCAACAU ..............(((....)))................................ ( -5.88 = -5.67 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:39:52 2011