| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,972,368 – 19,972,465 |
| Length | 97 |
| Max. P | 0.609939 |
| Location | 19,972,368 – 19,972,465 |
|---|---|
| Length | 97 |
| Sequences | 12 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 78.13 |
| Shannon entropy | 0.44561 |
| G+C content | 0.51064 |
| Mean single sequence MFE | -32.40 |
| Consensus MFE | -13.72 |
| Energy contribution | -13.57 |
| Covariance contribution | -0.15 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.609939 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19972368 97 - 27905053 ------------------UUACUUCUCCUUGUGUGGCUGGAAGCCCAGAAUCUGCACAAUCAUGCCGAACUUCCGGUUUAACCGGAAACCCACUUCAUACGUGGCGGCGGCCGAU--- ------------------........(((((((..(((((....))))...)..)))))....((((...((((((.....))))))..((((.......)))))))))).....--- ( -33.10, z-score = -2.34, R) >droSim1.chr3R 19805708 97 - 27517382 ------------------UUACUUCUCCUUGUGUGGCUGGAAGCCCAGAAUCUGCACAAUCAUGCCGAACUUCCGGUUCAACCGGAAACCCACUUCAUACGUGGCGGCGGCCGCU--- ------------------........(((((((..(((((....))))...)..)))))....((((...((((((.....))))))..((((.......)))))))))).....--- ( -33.10, z-score = -2.11, R) >droSec1.super_0 20310269 97 - 21120651 ------------------UUACUUCUCCUUGUGUGGCUGGAAGCCCAGAAUCUGCACAAUCAUGCCGAACUUCCGGUUCAACCGGAAACCCACUUCAUACGUGGCGGCGGGCGCU--- ------------------.......((((((((..(((((....))))...)..)))))....((((...((((((.....))))))..((((.......)))))))))))....--- ( -34.20, z-score = -2.10, R) >droYak2.chr3R 2301522 97 + 28832112 ------------------UUACUUCUCCUUGUGCGGCUGGAAGCCCAGAAUCUGCACAAUCAUGCCGAACUUCCGGUUCAACCGGAAACCCACUUCAUACGUGGCCACGCCCGCU--- ------------------..........((((((((((((....))))...))))))))....((.....((((((.....))))))..((((.......))))........)).--- ( -28.50, z-score = -2.09, R) >droEre2.scaffold_4820 2384682 97 + 10470090 ------------------UUACUUCUCCUUGUGUGGCUGGAAGCCCAGAAUCUGCACAAUCAUGCCAAACUUCCGGUUCAACCGGAAACCCACUUCAUACGUGGCGGCGGCCGCA--- ------------------........(((((((..(((((....))))...)..)))))....(((....((((((.....))))))..((((.......)))).))))).....--- ( -31.40, z-score = -1.76, R) >droAna3.scaffold_13340 1174019 94 + 23697760 ------------------UUACUUCUCCUUGUGUGGCUGGAAGCCCAAAAUUUGCACAAUCAUGCCAAAUUUCCGGUUCAGCCGGAAACGUACUUCAUACGAGGCGGUCGUG------ ------------------.(((..((((((((((((((((..(((..(((((((((......)).)))))))..))))))))((....)).....))))))))).))..)))------ ( -30.30, z-score = -2.55, R) >dp4.chr2 14505666 110 - 30794189 --------AGAGCAUCGCUUACUUCUCCUUGUGUGGCUGGAAUCCCAAAAUCUGCACAAUCAUGCCGAAUUUCCGGUUCAGCCGGAAACGCACAUCAUGCGAGGUGGCGGCGGCGCUG --------..(((..((((.........(((((..(.(((....)))....)..)))))....((((..(((((((.....)))))))((((.....))))...))))))))..))). ( -38.90, z-score = -1.29, R) >droPer1.super_0 5907418 110 + 11822988 --------AGAGCAUCGCUUACUUCUCCUUGUGUGGCUGGAAUCCCAAAAUCUGCACAAUCAUGCCGAAUUUCCGGUUCAGCCGGAAACGCACAUCAUGCGAGGUGGCAGCGGCGCUG --------..(((..(((..........(((((..(.(((....)))....)..)))))...(((((..(((((((.....)))))))((((.....))))...))))))))..))). ( -39.30, z-score = -1.71, R) >droWil1.scaffold_181089 6433454 104 + 12369635 -----------UAGACACUUACUUCUCCUUGUGUGGCUGAAAGCCGAAAAUUUGCACAAUCAUGCCAAAUUUCCGGUUUAGACGGAAACGCACUUCAUAAGAGGCGGGACUAGAU--- -----------......((..(((((....(((((.(((.((((((.(((((((((......)).))))))).))))))...)))...)))))......)))))..)).......--- ( -27.90, z-score = -1.85, R) >droMoj3.scaffold_6540 7419223 117 - 34148556 AAGGGGGGUCUCUGACACUUACUUCUCCUUGUAUGGCUGAAAUCCCAAAAUUUGCACAAUCAUGCCAAAUUUCCGGUUCAAACGGAAACGUACUUCAUAGGAGGUGCGGCCCUCAUU- ...(((((((.......................(((((((.....((.....)).....))).))))..((((((.......)))))).(((((((....))))))))))))))...- ( -33.50, z-score = -1.52, R) >droGri2.scaffold_14906 9656180 108 + 14172833 GCCGAUUAUUAGUCGCACUUACUUCUCCUUGUGUGGCUGAAAUCCCAAAAUUUGCACAAUCAUGCCAAAUUUCCGGUUCAAACGGAAACGGACUUCAUAGGAGGCGUU---------- (((((((.((((((((((............))))))))))))))((..((((((((......)).))))))((((.(((.....))).)))).......)).)))...---------- ( -30.70, z-score = -2.37, R) >droVir3.scaffold_12822 1117991 96 + 4096053 ---------------CACUUACUUCUCCUUGUGUGGCUGGAAUCCCAAAAUUUGCACAAUCAUGCCAAAUUUCCGGUUCAAACGGAAACGUACUUCAUAGGAGGAGGCAUU------- ---------------........(((((((.(((((((((((.......(((((((......)).))))))))))))....(((....)))....)))).)))))))....------- ( -27.91, z-score = -2.54, R) >consensus __________________UUACUUCUCCUUGUGUGGCUGGAAGCCCAAAAUCUGCACAAUCAUGCCAAAUUUCCGGUUCAACCGGAAACGCACUUCAUACGAGGCGGCGGCCGCU___ ............................((((((((.((......))....))))))))...((((....(((((.......))))).....(.......).))))............ (-13.72 = -13.57 + -0.15)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:39:51 2011