| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,964,185 – 19,964,278 |
| Length | 93 |
| Max. P | 0.938944 |
| Location | 19,964,185 – 19,964,278 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 69.05 |
| Shannon entropy | 0.56886 |
| G+C content | 0.32255 |
| Mean single sequence MFE | -21.12 |
| Consensus MFE | -8.58 |
| Energy contribution | -9.42 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.61 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.45 |
| SVM RNA-class probability | 0.938944 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19964185 93 - 27905053 AUAUACUUGGCAGCGAUAUAAUCUGAAUUACAGUGCACAAUAUUGGAUCC--AUUAAAAUUCCCGAAAAUGGGUGUUGCGGAAGUAAUUCCUUAU---- .........(((((................(((((.....))))).((((--(((............))))))))))))((((....))))....---- ( -18.60, z-score = -0.51, R) >droSim1.chr3R 19797019 93 - 27517382 AUAUACUUGUUAGAGAUCUAAUCGGAAUUACUUUGCACAAUAUUUGAUCA--AUUCAAAUUCCCAAAGAUGGUUGUUGCGGAAGUAAUUCCUAUU---- ........(((((....))))).(((((((((((((((((.((((((...--..))))))..(((....)))))).))).)))))))))))....---- ( -23.80, z-score = -3.23, R) >droSec1.super_0 20302186 93 - 21120651 AUAUACUUGCUAGAGAUCUAAUCGGAAUUACUUUGCACAAUAUUUGAUCA--AUUAAAAUUCCCAAAGAUGGGUGUCUCGGAAGUAAUUUCUAUU---- ...(((((.(.(((.(((((.((((((((...(((..((.....))..))--)....))))))....))))))).))).).))))).........---- ( -17.10, z-score = -0.85, R) >droYak2.chr3R 2293090 91 + 28832112 AUACACUUGGUAGAGAUCUAAUCGGAAUUACUCUGCAAAACAUUCAAUUC--ACUAAAAUCA--AAGGAUGGAUGUUGCGGAAGUAAUUCCUAUU---- ........(((((....)).)))((((((((((((((..(((((((..((--.((.......--.)))))))))))))))).)))))))))....---- ( -25.60, z-score = -4.17, R) >droEre2.scaffold_4820 2376265 93 + 10470090 AUAUACUUGAUAGAGAUCUAAUCGGAAUUACUCUGCAAAAUAUUCAAUUC--CCUAAAAUUAGCGAAAAUGGGUGCUGCGGAAGUAAUUCCUAUU---- ........(((((....)).)))((((((((((((((...((((((.(((--.(((....))).)))..)))))).))))).)))))))))....---- ( -24.00, z-score = -3.22, R) >droWil1.scaffold_181089 6425604 99 + 12369635 AUACACUUUGCCGGAAGAGUAUAUCGAUUGUAAUGUAAGGUAGGUGUUUCAUAUUAUUAUCAUUAAGGAUAAAUGAUAGUUUUUGAGUUCUGAAUUAUU ..((((((.(((.......((((.....))))......)))))))))((((....(((((((((.......)))))))))...))))............ ( -17.62, z-score = -0.51, R) >consensus AUAUACUUGGUAGAGAUCUAAUCGGAAUUACUCUGCAAAAUAUUUGAUCC__AUUAAAAUUACCAAAGAUGGGUGUUGCGGAAGUAAUUCCUAUU____ .......................((((((((((((((..(((((((.((..................)))))))))))))).)))))))))........ ( -8.58 = -9.42 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:39:51 2011