| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,897,914 – 19,897,964 |
| Length | 50 |
| Max. P | 0.993943 |
| Location | 19,897,914 – 19,897,964 |
|---|---|
| Length | 50 |
| Sequences | 3 |
| Columns | 51 |
| Reading direction | reverse |
| Mean pairwise identity | 55.26 |
| Shannon entropy | 0.62847 |
| G+C content | 0.37333 |
| Mean single sequence MFE | -10.77 |
| Consensus MFE | -6.50 |
| Energy contribution | -7.07 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.66 |
| SVM RNA-class probability | 0.993943 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19897914 50 - 27905053 -AGCAGAUCAAAUUAAGUUGCCGCAUGGGUAACAGUGCGUUGAUCAAAUAA -....((((((.....((((((.....))))))......))))))...... ( -14.00, z-score = -2.63, R) >droAna3.scaffold_13266 2113688 50 + 19884421 -AGACGAUUAGAUUAAGCUGCCAUUUGGGUAGCAGUGCGCUAAUCAUGUGA -....((((((.....((((((.....))))))......))))))...... ( -15.90, z-score = -2.37, R) >droWil1.scaffold_181154 3509931 50 - 4610121 CUUGGAAAAAGAAGAAAUACUUACACCAUUAGCA-UGCGAUAAUUAAAUAA ..(((...(((.(....).)))...)))......-................ ( -2.40, z-score = 0.05, R) >consensus _AGAAGAUAAGAUUAAGUUGCCACAUGGGUAGCAGUGCGAUAAUCAAAUAA .....((((((.....((((((.....))))))......))))))...... ( -6.50 = -7.07 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:39:40 2011