Locus 1127

Sequence ID	dm3.chr2L
Location	8,476,016 – 8,476,096
Length	80
Max. P	0.506202

overview

Window 5

Location	8,476,016 – 8,476,096
Length	80
Sequences	4
Columns	91
Reading direction	reverse
Mean pairwise identity	78.73
Shannon entropy	0.33950
G+C content	0.52158
Mean single sequence MFE	-29.48
Consensus MFE	-19.61
Energy contribution	-20.18
Covariance contribution	0.56
Combinations/Pair	1.20
Mean z-score	-1.43
Structure conservation index	0.67
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.02
SVM RNA-class probability	0.506202
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 8476016 80 - 23011544
UGAGCUGGAUCUUUUCAACCUGGCGAAAGUAGGAUUGAGGACUUGGCCCGCUUUUGGCAUUUGGCUAGCUCCAACGCU---CU--------
.((((.........((((((((.(....))))).))))(((.((((((.((.....))....)))))).)))...)))---).-------- ( -27.60, z-score =  -1.45, R)
>droSim1.chr2L 8253347 88 - 22036055
UGAGCUGGAUCUUUUCAAUCUGGCGAAAGUAGGAUUGAGGACUUGGCCUGCUUUUGGCAUUUGGCUAGCUCCAACGCU---CUAAGCGACU
.(((((((.((((((((((((.((....)).))))))))))....(((.......)))....)))))))))...(((.---....)))... ( -32.60, z-score =  -2.53, R)
>droSec1.super_3 3963196 81 - 7220098
------UGAGCUUUUCAAUCUGGCGAAAGUAGGAUUGGGGACUUGGCCCGC-UUUGGCAUUUGGCUAGCUCCAGUGCU---CUAAGCGACU
------.(((.((..((((((.((....)).))))))..)))))....(((-((.((((((.((......))))))))---..)))))... ( -29.70, z-score =  -1.40, R)
>droEre2.scaffold_4929 9062641 90 - 26641161
UGAGCUGGAUCUCUCCCAAUUGACGAAAGUGGGAUUGAGGACUUGGCCCGC-UUUGGCAUUUGGCCAGCACCGACUCCGAGCCAAGCGACU
...(((((..(((((((.....((....))))))....(((.((((...((-(..(((.....)))))).)))).)))))))).))).... ( -28.00, z-score =  -0.36, R)
>consensus
UGAGCUGGAUCUUUUCAAUCUGGCGAAAGUAGGAUUGAGGACUUGGCCCGC_UUUGGCAUUUGGCUAGCUCCAACGCU___CUAAGCGACU
..............(((((((.((....)).)))))))(((.((((((.((.....))....)))))).)))................... (-19.61 = -20.18 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:26:10 2011