| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,853,506 – 19,853,619 |
| Length | 113 |
| Max. P | 0.924383 |
| Location | 19,853,506 – 19,853,619 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 87.63 |
| Shannon entropy | 0.20538 |
| G+C content | 0.40356 |
| Mean single sequence MFE | -26.54 |
| Consensus MFE | -22.50 |
| Energy contribution | -25.06 |
| Covariance contribution | 2.56 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.31 |
| SVM RNA-class probability | 0.924383 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19853506 113 + 27905053 AUUCACCUCCCCC-UUCGACGCAUUGUUAAUCAGAAUGGAAAAAGUUUCAUUUACUCGUAUCU----UCCAUGAAAGUGAAUUAACAGUGCGGCAAUUUCUGUAUUUCAGCAUUGGCA-- .............-.....((((((((((((..((((((((....))))))))..........----..(((....))).))))))))))))((.....(((.....))).....)).-- ( -25.70, z-score = -1.89, R) >droEre2.scaffold_4820 2266532 114 - 10470090 AUUCCCCUUCCCCCUCCGCGGCACAGUUAAUCAGAAUGGAAAAAGUUUCAUUCACCCGUAUAG----UCCAUGAAAGUAAAUUAACAGUGUGGCAAUUUCUGUAUUUCUGCAUUGGCA-- ...............((((.((((.((((((..((((((((....))))))))..........----...((....))..)))))).)))).))......((((....))))..))..-- ( -21.10, z-score = -0.25, R) >droYak2.chr3R 2184152 113 - 28832112 AUUCACCUCCC---ACCGCCGCAUUGUUAAUCGGAAUGGAAAAAGUUUCAUUCAGCCGUAGCU----UCCAUGAAAGUAAAUUAACAGUGUGGCAAUUUCUGUAUCUCUGCAUUGGCACA .........((---(..((((((((((((((..((((((((....))))))))(((....)))----.............))))))))))))))......((((....)))).))).... ( -30.10, z-score = -2.44, R) >droSec1.super_0 20195069 115 + 21120651 AUUUACCUCCC---UUCGCCGCAUUGUUAAUCAGAAUGGAAAAAGUUUCAUUUACUCGUAUCUUCCUUCCAUGAAAGUGAAUUAACAGUGCGGCAAUUUCUGUAUUUCAGCAUUGGCA-- .....((....---...((((((((((((((..((((((((....))))))))................(((....))).)))))))))))))).....(((.....)))....))..-- ( -30.20, z-score = -3.57, R) >droSim1.chr3R 19686620 115 + 27517382 AUUCACCUCCC---UUCGCCGCAUUGUUAAUCAGAAUGGAAAAAGUUUCAUUUACUCGUAUCUUCCUUCCAUGAAAGUGAAUUAACAGCGCGGCAAUUUCUGUAUUUCAGCAUUGGCA-- .....((....---...(((((.((((((((..((((((((....))))))))................(((....))).)))))))).))))).....(((.....)))....))..-- ( -25.60, z-score = -1.82, R) >consensus AUUCACCUCCC___UUCGCCGCAUUGUUAAUCAGAAUGGAAAAAGUUUCAUUUACUCGUAUCU____UCCAUGAAAGUGAAUUAACAGUGCGGCAAUUUCUGUAUUUCAGCAUUGGCA__ .................((((((((((((((..((((((((....))))))))................(((....))).))))))))))))))...............((....))... (-22.50 = -25.06 + 2.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:39:39 2011