| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,846,049 – 19,846,143 |
| Length | 94 |
| Max. P | 0.961600 |
| Location | 19,846,049 – 19,846,143 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 74.73 |
| Shannon entropy | 0.41508 |
| G+C content | 0.32627 |
| Mean single sequence MFE | -16.51 |
| Consensus MFE | -10.64 |
| Energy contribution | -11.83 |
| Covariance contribution | 1.19 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.70 |
| SVM RNA-class probability | 0.961600 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19846049 94 - 27905053 CAGCUCGCUAAAGUAUUAAAUAAAUAUUUAAAACGUAUAAAAGACUCAAAUUUUAAGCACUGAGUCAUUUGGCGAUCGGUAGUCACACACAUUC ..(.((((((((((.((((((....)))))).))........((((((............)))))).)))))))).)................. ( -19.20, z-score = -2.99, R) >droAna3.scaffold_13340 15990832 73 + 23697760 CGACUUGUGAAAAUAUUAAAUAAAAAUCU-AGACAAAAAAAAAACUGAAUUUUG------UGAGUCAUCU-GCGGUAGAGC------------- .((((((..(((.................-...................)))..------))))))....-((......))------------- ( -6.62, z-score = 0.51, R) >droSec1.super_0 20187766 92 - 21120651 CAGCUCGCUAAAGUAUUAAAUAAAUAUUUAAAACGUAUAAAAGACUCAAAUUUAAAGCACUGAGUCAUUUGGCGAUCGGUAGUCAUCCAUGC-- ..(.((((((((((.((((((....)))))).))........((((((............)))))).)))))))).)((.......))....-- ( -20.10, z-score = -2.91, R) >droSim1.chr3R 19677507 92 - 27517382 CAGCUCGCUAAAGUAUUAAAUAAAUAUUUAAAACGUAUAAAAGACUCAAAUUUUAAGCACUGAGUCAUUUGGCGAUCGGUAGUCAUCCAUGC-- ..(.((((((((((.((((((....)))))).))........((((((............)))))).)))))))).)((.......))....-- ( -20.10, z-score = -2.78, R) >consensus CAGCUCGCUAAAGUAUUAAAUAAAUAUUUAAAACGUAUAAAAGACUCAAAUUUUAAGCACUGAGUCAUUUGGCGAUCGGUAGUCAUCCAUGC__ ....((((((((((.((((((....)))))).))........((((((............)))))).))))))))................... (-10.64 = -11.83 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:39:36 2011