| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,843,034 – 19,843,134 |
| Length | 100 |
| Max. P | 0.669935 |
| Location | 19,843,034 – 19,843,134 |
|---|---|
| Length | 100 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 90.00 |
| Shannon entropy | 0.14189 |
| G+C content | 0.46884 |
| Mean single sequence MFE | -22.40 |
| Consensus MFE | -21.59 |
| Energy contribution | -21.70 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.02 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.669935 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19843034 100 - 27905053 UCCCAUCGCACCGGGCCCAUUCACACGGGCAGUAACUGGUCGCAUGCGAAUCUACGGAUAAGUUAGCGGCGGAAACAAAACUGCAAAUUAACAUGUUAAC ((.(((.(((((((((((........)))).....))))).))))).))(((....)))..(((((..((((........))))...)))))........ ( -26.40, z-score = -0.96, R) >droYak2.chr3R 2173513 100 + 28832112 UCUCAUCAUACAAGGCCCAUUCACACGGACAGUAACUGGUCGCACGCGAAUCUACGGAUAAGUUAGCGGCGGAAACAAAACUGCAAAUUAACAUGUUAAC .........(((.(..((........)).((((.....(((((..((..(((....)))..))..)))))(....)...))))........).))).... ( -18.40, z-score = -0.30, R) >droEre2.scaffold_4820 2256115 92 + 10470090 --------UACCAGGUCCAUUCACACGGACAGUAACUGGUCGCACGCGAAUCUACGGAUAAGUUAGCGGCGGAAACAAAACUGCAAAUUAACAUGUUAAC --------......((((........))))..(((((((((((..((..(((....)))..))..)))))(....)...............)).)))).. ( -22.40, z-score = -1.80, R) >consensus UC_CAUC_UACCAGGCCCAUUCACACGGACAGUAACUGGUCGCACGCGAAUCUACGGAUAAGUUAGCGGCGGAAACAAAACUGCAAAUUAACAUGUUAAC ..............((((........))))..(((((((((((..((..(((....)))..))..)))))(....)...............)).)))).. (-21.59 = -21.70 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:39:36 2011