| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,832,992 – 19,833,061 |
| Length | 69 |
| Max. P | 0.576184 |
| Location | 19,832,992 – 19,833,061 |
|---|---|
| Length | 69 |
| Sequences | 6 |
| Columns | 73 |
| Reading direction | reverse |
| Mean pairwise identity | 70.43 |
| Shannon entropy | 0.56062 |
| G+C content | 0.56052 |
| Mean single sequence MFE | -21.79 |
| Consensus MFE | -8.93 |
| Energy contribution | -10.32 |
| Covariance contribution | 1.39 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.576184 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19832992 69 - 27905053 GAGCUGAUUGAGUGGGUGGCAUCGCGCUGCCCCUUUAUUAGACCCAUUUG---GGAGGUACCUCACCCCUUU- ((((((((.(((.(((..((.....))..)))))).))))).(((....)---))......)))........- ( -25.00, z-score = -2.09, R) >droSim1.chr3R 19662252 69 - 27517382 GAACUGAUUGAGAGGGUGGCAUCGCGCUGCCCCUUUAUUAUACCCAUUUG---GGAGGUACCUCACCCCUUU- ....((((.(((.(((..((.....))..)))))).))))..(((....)---)).(((.....))).....- ( -20.70, z-score = -1.37, R) >droSec1.super_0 20174494 69 - 21120651 GAGCUGAUUGAGUGGGUGGCAUCGCGCUGCCCCUUUAUUAUACCCAUUUG---GGAGGUACCUCACCCCUUU- (((.((((.(((.(((..((.....))..)))))).))))..(((....)---))......)))........- ( -21.80, z-score = -1.21, R) >droYak2.chr3R 2163379 59 + 28832112 GAGCUGAUUGAGUGGGUG----------GCCCCUUUAUAAGACCCAUUGG---GGAGGCACCUCCACCCACU- ..........((((((((----------(((((...............))---))((....)))))))))))- ( -22.06, z-score = -1.33, R) >droEre2.scaffold_4820 2245960 69 + 10470090 GAGCUGAUUGAGUGGGUGGCAUCUCGCUGCCCCUUCACAAGACCCAUCGG---GGAGGCACCUCC-CCCAUUU ((.((...((((.(((..((.....))..))).))))..)).....))((---((((....))))-))..... ( -28.20, z-score = -1.81, R) >dp4.chr2 14350179 72 - 30794189 GGGCCCACUCAGCAGUGCUUAGUGCUCCCCGCCCCUAAUUCUCCCAUUUACCCGGCUUUACCUCUAUCUCCU- (((..((((.(((...))).))))..))).(((..(((.........)))...)))................- ( -13.00, z-score = -1.08, R) >consensus GAGCUGAUUGAGUGGGUGGCAUCGCGCUGCCCCUUUAUUAGACCCAUUUG___GGAGGUACCUCACCCCUUU_ ........((((.(((((((.....))))))).)))).................(((....)))......... ( -8.93 = -10.32 + 1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:39:30 2011