| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,828,767 – 19,828,859 |
| Length | 92 |
| Max. P | 0.923087 |
| Location | 19,828,767 – 19,828,859 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 70.00 |
| Shannon entropy | 0.53865 |
| G+C content | 0.27773 |
| Mean single sequence MFE | -17.37 |
| Consensus MFE | -8.30 |
| Energy contribution | -10.22 |
| Covariance contribution | 1.92 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.30 |
| SVM RNA-class probability | 0.923087 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19828767 92 - 27905053 AAAAUAAACUCAAGUGAGUAGAAAUAAUAUA--CAUACACAUAUUUGGGAAUUUUCCGGAAAUGUGUAAAAUUUAUUAUGU-AACUCUGUUUUCA ...............((((....((((((..--..(((((((.(((((((...))))))).))))))).....))))))..-.))))........ ( -19.40, z-score = -2.56, R) >droAna3.scaffold_13340 15976715 71 + 23697760 -----------UAAUGAGAGGAGAAGAAUU---UCCACAAAUGUUUGCAG--UCAUCAGAGCUGGUGGAAUUUUAUU------GAUUUGUUUU-- -----------(((((((((((((....))---)))..............--((((((....))))))..)))))))------).........-- ( -12.40, z-score = -0.00, R) >droEre2.scaffold_4820 2241708 93 + 10470090 GAAGUAAACUCAAAUGAAUAGAAAUAAUAUA--CACAGAUAUUUUUGGAAAUUUUCCGGAAAUGUAUCAAAUUUGUUAUGUAAACUCUGCUUUCA ((((((...((....))......((((((..--.....(((((((((((.....)))))))))))........))))))........)))))).. ( -14.26, z-score = -0.84, R) >droSec1.super_0 20170277 94 - 21120651 -AAGUAAACUCAACUGAGUAAAAAUAAUAUAAACACACACACAUUUGGAAAUUUUCCGGAAAUGUGUAAAAUGUAUUAUGUAAACUCUGUUUUCA -..........(((.((((....((((((((.....(((((..((((((.....))))))..)))))....))))))))....)))).))).... ( -20.20, z-score = -2.85, R) >droSim1.chr3R 19658023 94 - 27517382 -AAGUAAACUCAAGUGAGUAGAAAUAAUAUAAACACACGCAUAUUUGGAAAUUUUCCGGAAAUGUGUAAAAUGUAUUAUGUAAACUCUGUUUUCA -..(.((((......((((....((((((((.....((((((.((((((.....)))))).))))))....))))))))....)))).)))).). ( -20.60, z-score = -2.77, R) >consensus _AAGUAAACUCAAAUGAGUAGAAAUAAUAUA__CACACACAUAUUUGGAAAUUUUCCGGAAAUGUGUAAAAUUUAUUAUGUAAACUCUGUUUUCA ...............((((....((((((.......((((((.(((((((...))))))).))))))......))))))....))))........ ( -8.30 = -10.22 + 1.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:39:27 2011