| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,827,750 – 19,827,841 |
| Length | 91 |
| Max. P | 0.964285 |
| Location | 19,827,750 – 19,827,841 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 65.58 |
| Shannon entropy | 0.56296 |
| G+C content | 0.30568 |
| Mean single sequence MFE | -15.49 |
| Consensus MFE | -9.12 |
| Energy contribution | -9.12 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.73 |
| SVM RNA-class probability | 0.964285 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19827750 91 - 27905053 -----------------AUUCAUUAUUUCUCUGGCAUUCUCAUAGAUACAAAAUUUCGUGAGAUUGUGCCC-UUUUUUCGGAUUUUCCCAAUCUAUGAAUCGAAAAAAC -----------------...............(((((((((((..(........)..))))))..))))).-((((((((.((((...........)))))))))))). ( -18.60, z-score = -2.10, R) >droEre2.scaffold_4820 2240658 108 + 10470090 UAAAAACAAUUUAAAGUAUAUUUCACUUCUAUUGAAUUCUCAUGGAUACAACAUUUCGUGAGAUUGUGCCU-UUUUUGCGGAUUACACCAAUCUAUGAAUCGAAAAAAA ......((((...((((.......))))..)))).....((((((((.......((((..(((........-.)))..))))........))))))))........... ( -16.46, z-score = -0.71, R) >droYak2.chr3R 2158108 103 + 28832112 UAAAAUCAAUUUCAAAUAUAUUUCACUGCUAUUGAAAUAUUUUAGACACAACAUGUCGUGAGAUUGUGCC--UUUUUUCGGAUUAUAUCAAUCUAUGAAUCGAGA---- ......((((((((((.((((((((.......)))))))).)).((((.....)))).))))))))....--...((((((.(((((......))))).))))))---- ( -20.00, z-score = -1.55, R) >droSec1.super_0 20169254 73 - 21120651 -----------------------------------AUUCUCAUAGAUACAAAAUUUCGUGAGAUUGUACCCUUUUUUUCGUAUUUUCCCAAUCUAUGAAUCGAAAAAC- -----------------------------------..((((((..(........)..))))))..........(((((((.((((...........))))))))))).- ( -10.90, z-score = -1.64, R) >droSim1.chr3R 19656977 73 - 27517382 -----------------------------------AUUCUCAUAGAUACAAUAUUUCGUGAGAUUGCACCC-UUUUUUCGGAUUUUCCCAAUCUAUAAAUCGAGAAAAC -----------------------------------.(((((((((((........((....))........-.......((......)).)))))).....)))))... ( -11.50, z-score = -1.34, R) >consensus _________________AU___U_A_U_CU_U_G_AUUCUCAUAGAUACAAAAUUUCGUGAGAUUGUGCCC_UUUUUUCGGAUUUUCCCAAUCUAUGAAUCGAAAAAA_ .......................................((((((((((((....((....)))))))...........((......))..)))))))........... ( -9.12 = -9.12 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:39:26 2011