| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,799,878 – 19,799,972 |
| Length | 94 |
| Max. P | 0.940039 |
| Location | 19,799,878 – 19,799,972 |
|---|---|
| Length | 94 |
| Sequences | 12 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 59.57 |
| Shannon entropy | 0.77486 |
| G+C content | 0.64856 |
| Mean single sequence MFE | -45.60 |
| Consensus MFE | -12.62 |
| Energy contribution | -12.26 |
| Covariance contribution | -0.35 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.28 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.46 |
| SVM RNA-class probability | 0.940039 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19799878 94 + 27905053 ------------------------CCGGAUUUGAGCUGCCCGAUACCGGGCGCCGGAUCGGGUUCACUGACGAGCCUGGGCCUGAAGGAGCUGCUCGAGCUCCACAGGCAAAGGCUUG ------------------------((.((((((.((.(((((....))))))))))))).))........(((((((..(((((..((((((.....)))))).)))))..))))))) ( -52.90, z-score = -4.92, R) >droGri2.scaffold_15074 1575414 91 - 7742996 ------------------------CCGGAGCUCGGU--GCCGAAUCCGCG-GCUGGUGACGUUGCUGCGUCCGGUAUGUGUCUCAAGGAGCUGCUCGAGCUUCACCGGCAGCGACUUG ------------------------(((((..(((..--..)))...((((-((((....))..))))))))))).........((((..(((((.((........)))))))..)))) ( -37.60, z-score = -0.59, R) >droMoj3.scaffold_6540 7077106 91 + 34148556 ------------------------CCGGAGCUCGGU--GCAGAGGCCGCG-GCUGGUGAAGUUGGUGCAUCGGGUUUGUGUCUCAAGGAGCUCCUCGAGCUCCACAGACAGCGUCUUG ------------------------.(((((((((((--(((..((((((.-....)))..)))..)))))))))))).(((((...(((((((...)))))))..))))).))..... ( -37.10, z-score = -0.69, R) >droVir3.scaffold_13047 18533332 91 + 19223366 ------------------------CCGGAGCUCGGU--GCAGAGGCCGCG-GCUGGUCAAGUUGGUGCGUCCGGUUUGUGUCUCAAGGAGCUCUUGGAGCUCCAUAGACAGCGACUCG ------------------------...(((.(((.(--((.(((((.(((-(((((....((....))..)))).)))))))))..(((((((...)))))))...).)).)))))). ( -35.70, z-score = -0.38, R) >droWil1.scaffold_181089 11279275 115 - 12369635 CCGGAUCUCAGUGUCGGUCCAGGUGCUAAUCCUGGU--GCCUGUCCUGGG-CCAAGUGCAGCUGCGGCGGCGGAUGUUUGCCUGCGGGAGCUGCUCGAGCUUCACAGGCAACGUCUAG (((..((.((((.((((..((((..(((....))).--.))))..))))(-(.....)).)))).))))).(((((((.(((((..((((((.....)))))).)))))))))))).. ( -48.10, z-score = -0.34, R) >droPer1.super_0 5696416 106 - 11822988 CCGGAUCUCAGUGCUGGUUCGGGACCAGGUUCUGGA--ACGGGGUCUGGA-ACGGUGCCAGGUGUGG---------UUUGCCUCAGGGAGCUGCUCGAGCUUCAUCGGCAGCGUCUUG (((((((((....((((((...))))))(((....)--))))))))))).-(((.((((.((((.((---------((((...(((....)))..)))))).)))))))).))).... ( -44.80, z-score = -1.12, R) >dp4.chr2 14305630 106 + 30794189 CCGGAUCUCAGUGCUGGUUCGGGACCAGGUUCUGGA--ACGGGGUCUGGA-ACGGUGCCAGGUGUGG---------UUUGCCUCAGGGAGCUGCUCGAGCUUCAUCGGCAGCGUCUUG (((((((((....((((((...))))))(((....)--))))))))))).-(((.((((.((((.((---------((((...(((....)))..)))))).)))))))).))).... ( -44.80, z-score = -1.12, R) >droAna3.scaffold_13340 15937975 85 - 23697760 ------------------------CCGGAUUUGAGC-GCCGGAUCCGGAGUGCCAGCU-------GGUGGGGCGC-UGGACCUGAAGGAGCUACUCGAGCUCCACAGGCAGCGACGCG ------------------------(((((((((...-..)))))))))(((....)))-------.(((...(((-((..((((..((((((.....)))))).))))))))).))). ( -38.90, z-score = -1.50, R) >droEre2.scaffold_4820 2212593 94 - 10470090 ------------------------CCGGAUUUGAGCUGCCCGCUUCCGGGCGCCGAAUCCGCUUCGCUGGCGGGCCUGAACCUGAAGGAGCUGCUCGAGCUCCACAGGCAAAGGCUCG ------------------------..(((((((.((.(((((....))))))))))))))(((.....)))((((((...((((..((((((.....)))))).))))...)))))). ( -50.50, z-score = -3.39, R) >droYak2.chr3R 2129871 94 - 28832112 ------------------------CCGGAUUUGAGCUGCCCCAUUCCGGGCGCCGGAUCGGGUUCGCUAGCGGGCCUGGGCCUGAAGGAGCUGCUCGAGCUCCACAGGCAAAGGCUCG ------------------------((.((((((.((.((((......)))))))))))).))........(((((((..(((((..((((((.....)))))).)))))..))))))) ( -51.00, z-score = -2.55, R) >droSec1.super_0 20141392 94 + 21120651 ------------------------CCGGAUUUGAGCUGCCCGAUUCCGGGCGCCGGAUCGGGUUCGCUGACGAGCCUGGGCCUGAAGGAGCUGCUCGAGCUCCACAGGCAAAGGCUUG ------------------------((.((((((.((.(((((....))))))))))))).))........(((((((..(((((..((((((.....)))))).)))))..))))))) ( -52.90, z-score = -4.03, R) >droSim1.chr3R 19624106 94 + 27517382 ------------------------CCGGAUUUGAGCUGCCCGAUUCCGGGCGCCGGAUCGGGUUCGCUGACGAGCCUGGGCCUGAAGGAGCUGCUCGAGCUCCACAGGCAAAGGCUUG ------------------------((.((((((.((.(((((....))))))))))))).))........(((((((..(((((..((((((.....)))))).)))))..))))))) ( -52.90, z-score = -4.03, R) >consensus ________________________CCGGAUUUGAGC__CCCGAUUCCGGG_GCCGGAUCAGGUGCGGUGGCGGGCCUGUGCCUGAAGGAGCUGCUCGAGCUCCACAGGCAACGGCUUG .........................(((.................)))...............................(((....((((((.....))))))...)))......... (-12.62 = -12.26 + -0.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:39:19 2011