| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,798,294 – 19,798,393 |
| Length | 99 |
| Max. P | 0.561716 |
| Location | 19,798,294 – 19,798,393 |
|---|---|
| Length | 99 |
| Sequences | 14 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 75.70 |
| Shannon entropy | 0.50683 |
| G+C content | 0.45883 |
| Mean single sequence MFE | -25.81 |
| Consensus MFE | -15.25 |
| Energy contribution | -15.74 |
| Covariance contribution | 0.49 |
| Combinations/Pair | 1.33 |
| Mean z-score | -0.93 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.561716 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19798294 99 - 27905053 GCAAACUGUGCAGAAUUUUCUCUUGUGAUGAGUUGGCUCGGACCAACAAUGGGCAACGGGAUUCUGUGC------GGAAUGG---AAUGACACAUG---ACAGCU-AUAUUC------- ((...(((..(((((...((((((((.....(((((......))))).....)))).)))))))))..)------))..((.---.(((...))).---.)))).-......------- ( -27.10, z-score = -1.24, R) >droGri2.scaffold_15074 1573326 96 + 7742996 GCAAACCGUGCAGAAUUUUCUCUUGUGAUGGGUUGGCUCCGACCAACAAUGGGCGACGGGAUUCUGUCC--------AAAGA---CAUGACAGAUG---CCAAGU--UAUUC------- (((..(((((((((....))).((((....(((((....))))).))))...)).))))...((((((.--------.....---...))))))))---).....--.....------- ( -24.90, z-score = 0.06, R) >droMoj3.scaffold_6540 7075422 96 - 34148556 GCAUACGGUGCAGAAUUUUCUCUUGUGAUGGGUUGGUUCCGACCAACAAUGGGCGACGGGAUUCUGUCC--------AACGA---GAUGACAGUUG---UCAAGU--UAUUC------- ......((.(((((((((((.((..(....(((((....)))))....)..)).))..)))))))))))--------(((..---..((((....)---))).))--)....------- ( -27.40, z-score = -0.59, R) >droVir3.scaffold_13047 18531604 96 - 19223366 GCAAACGGUGCAGAAUUUUCUCUUGUGAUGGGUUGGCUCCGACCAACAAUGGGCGACGGGAUUCUGUCC--------AACGA---CAUGACAGAUG---CCAAGU--UAUUC------- ......((.(((((((((((.((..(....(((((....)))))....)..)).))..)))))))))))--------...((---(.((.......---.)).))--)....------- ( -24.70, z-score = 0.28, R) >droWil1.scaffold_181089 11277127 119 + 12369635 GCAAACUGUGCAGAACUUUCUCUUGUGAUGUGUUGGCUCGGACCAACAAUGGGCGACCGGAUUCUGUAUUUUUUUUUUUUUGUGAAAUGACACAUCAUGACAGACGACAUUUUGCAUUC .......((((((((...(((.(..(((((((((((.(((..(((....))).)))))...............((((......)))).)))))))))..).))).....)))))))).. ( -29.80, z-score = -1.06, R) >dp4.chr2 14304038 104 - 30794189 GCAAACUGUGCAGAAUUUCCUCUUGUGAUGGGUUGGCUCGGACCAACAAUGGGCAACGGGAUUCUGUAC------GCAAUGACACGAUGACAGUCGA-CACAGUU-AUAAUC------- ...((((((((((((..((((.((((.....(((((......))))).....)))).)))))))))...------.........((((....)))).-)))))))-......------- ( -29.60, z-score = -1.19, R) >droPer1.super_0 5694812 104 + 11822988 GCAAACUGUGCAGAAUUUCCUCUUGUGAUGGGUUGGCUCGGACCAACAAUGGGCAACGGGAUUCUGUAC------GCAAUGACACGAUGACAGUCGA-CACAGUU-AUAAUC------- ...((((((((((((..((((.((((.....(((((......))))).....)))).)))))))))...------.........((((....)))).-)))))))-......------- ( -29.60, z-score = -1.19, R) >droAna3.scaffold_13340 15936576 94 + 23697760 GCAAACUGUGCAGAAUUUUCUCUUGUGAUGAGUUGGCUCGGACCAACAAUGGGCAACGGGAUUCUGUAC-----------GG---AAUGACACAUG---ACAGUU-AUAUUC------- .....((((((((((...((((((((.....(((((......))))).....)))).))))))))))))-----------))---.(((((.....---...)))-))....------- ( -26.90, z-score = -1.92, R) >droEre2.scaffold_4820 2210979 99 + 10470090 GCAAACUGUGCAGAAUUUUCUCUUGUGAUGAGUUGGCUCGGACCAACAAUGGGCAACGGGAUUCUGUGC------GGAAUGG---AAUGACACAUG---ACAGCU-AUAUUC------- ((...(((..(((((...((((((((.....(((((......))))).....)))).)))))))))..)------))..((.---.(((...))).---.)))).-......------- ( -27.10, z-score = -1.24, R) >droYak2.chr3R 2128284 99 + 28832112 GCAAACUGUGCAGAAUUUUCUCUUGUGAUGAGUUGGCUCGGACCAACAAUGGGCAACGGGAUUCUGUGC------GGAAUGG---AAUGACACAUG---ACAGCU-AUAUUC------- ((...(((..(((((...((((((((.....(((((......))))).....)))).)))))))))..)------))..((.---.(((...))).---.)))).-......------- ( -27.10, z-score = -1.24, R) >droSec1.super_0 20139867 99 - 21120651 GCAAACUGUGCAGAAUUUUCUCUUGUGAUGAGUUGGCUCGGACCAACAAUGGGCAACGGGAUUCUGUGC------GGAAUGG---AAUGACACAUG---ACAGCU-AUAUUC------- ((...(((..(((((...((((((((.....(((((......))))).....)))).)))))))))..)------))..((.---.(((...))).---.)))).-......------- ( -27.10, z-score = -1.24, R) >droSim1.chr3R 19622559 99 - 27517382 GCAAACUGUGCAGAAUUUUCUCUUGUGAUGAGUUGGCUCGGACCAACAAUGGGCAACGGGAUUCUGUGC------GGAAUGG---AAUGACACAUG---ACAGCU-AUAUUC------- ((...(((..(((((...((((((((.....(((((......))))).....)))).)))))))))..)------))..((.---.(((...))).---.)))).-......------- ( -27.10, z-score = -1.24, R) >apiMel3.Group4 5349463 86 + 10796202 ACAGACGUUGCAGAAUUUUCUUCUAUGAUGUACCUGUUCGGACCAGCAGUGUGCAACUGGAUUCUGUGU------UCAACAA-AACAAAACCU-------------------------- ......((((((((((((((......))((((((((((......))))).)))))...))))))))...------.))))..-..........-------------------------- ( -18.40, z-score = -0.16, R) >triCas2.ChLG2 23231 84 - 12900155 ACACACAUUACAAAAUUUUCGCUUAUGAUGGAACGGUUCUGACCAACAGUGGGCUACCGGAUUCUACAA------CAAGCCA-AAAAUAUU---------------------------- ...............((((.((((.(..((((.((((.((.((.....)).))..))))...))))..)------.)))).)-))).....---------------------------- ( -14.50, z-score = -1.02, R) >consensus GCAAACUGUGCAGAAUUUUCUCUUGUGAUGAGUUGGCUCGGACCAACAAUGGGCAACGGGAUUCUGUGC______GGAAUGA___AAUGACACAUG___ACAGCU_AUAUUC_______ .......((((((((..((((.((((.....(((((......))))).....)))).)))))))))))).................................................. (-15.25 = -15.74 + 0.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:39:18 2011