| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,752,297 – 19,752,405 |
| Length | 108 |
| Max. P | 0.604999 |
| Location | 19,752,297 – 19,752,405 |
|---|---|
| Length | 108 |
| Sequences | 12 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 61.11 |
| Shannon entropy | 0.84412 |
| G+C content | 0.56547 |
| Mean single sequence MFE | -37.47 |
| Consensus MFE | -10.31 |
| Energy contribution | -10.76 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.28 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.604999 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19752297 108 - 27905053 GGCAGCCACCGUUGCCGUUGCCAGCUCACUGCCUACAAAA---GCAGCCGACCUUUGACCAAAGCGGCAGCUAGAGCAGGAUCUGGCCCUGCUCAUGAUGGCAGUGGCGAU ((((((....)))))).......((.(((((((..((..(---((.((((..((((....)))))))).))).(((((((.......))))))).))..)))))))))... ( -49.20, z-score = -3.14, R) >droGri2.scaffold_14830 298613 108 + 6267026 ---GGCUGUGAAAAAAAUCGAGGCGCCAGCGGCAGCAACUGCAGCAGCAAAGCAAUGACGAGUCCGUGAACUAGAGCAGAAUGUGGCGCUGCUGAUGUACGCGGUGGCAUU ---.((((((......((((.(((((((((....))..((((.((......))..(.(((....))).)......))))....)))))))..))))...))))))...... ( -33.70, z-score = 0.94, R) >droMoj3.scaffold_6540 8049640 96 + 34148556 ---GACGGUAAACAAUGCUGCGUUGCCCGUGA-AAUCACU-----------ACAAUGACCAAAUCUGAAUAAGGAUCAGGAUUUGGCCCUACUCAUGUAUGCACUGACACU ---..((((.....((((..(((((...(((.-...))).-----------.))))).((((((((((.......))).)))))))..........))))..))))..... ( -18.90, z-score = -0.12, R) >droVir3.scaffold_13047 13987206 96 - 19223366 ---GGCUGUGAGCACUGCCGAAGUGCCAGUGA-AACUAUU-----------GAAAUGACGAACUCUGGAAGUGGAGCAAGACUUGGCACUGCUCAUGUAUGCCAUGUCACU ---(((.(((((((.((((.((((..(((((.-...))))-----------)..........((((......))))....)))))))).)))))))....)))........ ( -29.40, z-score = -1.31, R) >droWil1.scaffold_181108 3977059 102 + 4707319 ---GGCUGUGGCCGAGUCAGCUGCUGCACUGCCAGUUAA------GAAAGAAGCAUGACCUAGUGAGCAGCUUGAGCAGGAUCUGGCCCUGCUCAUGUAUGCUGUGGCCAU ---(((((..((......(((((((.(((((...((((.------(.......).)))).))))))))))))((((((((.......)))))))).....))..))))).. ( -42.80, z-score = -1.63, R) >droPer1.super_0 6548495 102 - 11822988 ---GGUGACCAGCCCUGUGGCCGCUACACCGCCGUCGAA------AGUCGAGCAAUGACACCAGAAACAACUCGAGCAGGAUCUGUCCUUGCUCAUGUAUGCCCUGGCCCU ---((((..(.(((....))).)...))))((((.(...------.).)).)).......((((...((((..((((((((....))).)))))..)).))..)))).... ( -31.80, z-score = -1.15, R) >dp4.chr2 16897557 102 + 30794189 ---GGUGACCAGCCCUGUGGCCGCUACACCGCCGUCGAA------AGUCGAGCAAUGACACCAGAAACAACUCGAGCAGGAUCUGUCCUUGCUCAUGUAUGCCUUGGCCCU ---(((.....)))....((((((((((..((((.(...------.).)).))....................((((((((....))).))))).)))).))...)))).. ( -31.00, z-score = -0.87, R) >droAna3.scaffold_13340 15889492 96 + 23697760 ------GGCGGCCAACGUUGCAUCUUCAUUGCCAUUAAA------AGUAGACCAAUGACCCAAG---CGACUAGAGCAGGACGUGGCUCUGCUUAUGUUUGCUGUGGCCAU ------...(((((..(((((....((((((........------.......)))))).....)---))))...(((((.(((((((...)).)))))))))).))))).. ( -26.86, z-score = 0.08, R) >droEre2.scaffold_4820 2164411 108 + 10470090 GGCUGCCACCGUUGCCGCCGCCAGUUCACUGCCCACGAAA---ACAGCAGAGCUUUGACCCAAUCGGCAGCUGGAGCAGGAUCUGGCCCUGCUCAUGAUGGCAGUGGCGAU ((......))((((((((.((((..(((((((........---...))))((((((((.....)))).)))).(((((((.......))))))).))))))).)))))))) ( -40.40, z-score = -0.30, R) >droYak2.chr3R 20646032 108 - 28832112 GGCUGCCACCGUUGCCGUCGCCAGCUCAGUGCCUACGAAA---ACAGCUGAGCUUUGACCCAAUCGGCAGCUGGAGCAGGAUCUGGCCCUGCUCAUGAUGGCAGUGGCGAU ...((((((...((((((((((((((((((..........---...))))))))..((.....))))).....(((((((.......)))))))..))))))))))))).. ( -48.22, z-score = -2.25, R) >droSec1.super_0 20094042 108 - 21120651 GGCAGCCACCGUUGACGUUGCCAGCACACAGCCUACAAAA---GCAGCCGAGCUUUGACCAAAGCGGCAGCUAGAGCAGGAUCUGGCCCUGCUCAUGAUGGCGGUGGCGAU ....(((((((((...((((((........((........---))......(((((....)))))))))))..(((((((.......))))))).....)))))))))... ( -46.60, z-score = -2.44, R) >droSim1.chr3R 19576376 108 - 27517382 GGCAGCCACCGUUGCCGUUGCCAGCACACUGCCUACAAAA---GCAGCCGAGCUUUGACCAAAGCGGCAGCUAGAGCAGGAUCUGGCCCUGCUCAUGAUGGCGGUGGCGAU ....(((((((((..(((((((......((((........---))))....(((((....)))))))))))..(((((((.......)))))))..)..)))))))))... ( -50.80, z-score = -3.02, R) >consensus ___GGCCACCGUCGCCGUUGCCACUACACUGCCAACAAAA_____AGCCGAGCAAUGACCAAAGCGGCAGCUAGAGCAGGAUCUGGCCCUGCUCAUGUAUGCAGUGGCGAU ..............................(((........................................(((((((.......)))))))..(....)...)))... (-10.31 = -10.76 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:39:10 2011