Locus 11247

Sequence ID dm3.chr3R
Location 19,748,001 – 19,748,103
Length 102
Max. P 0.794550
window15450 window15451

overview

Window 0

Location 19,748,001 – 19,748,102
Length 101
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 97.43
Shannon entropy 0.04535
G+C content 0.59010
Mean single sequence MFE -34.95
Consensus MFE -33.98
Energy contribution -34.02
Covariance contribution 0.04
Combinations/Pair 1.04
Mean z-score -1.38
Structure conservation index 0.97
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.71
SVM RNA-class probability 0.794550
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 19748001 101 + 27905053
UGCACGGUGGACAAUACGGCACAGUGGGCAAUAGCCACCACCUGCCCUGCGGUUCUGCUCCGGCGAUCAGCGACAACACAAACAACACGAGAGCAGAGCGU
.(((.(((((....(((......)))(((....))).))))))))......(((((((((((((.....))(......)........)).))))))))).. ( -35.20, z-score =  -1.46, R)
>droEre2.scaffold_4820 2160076 101 - 10470090
UGCGCGGUGGACAAUACGACACAGUGGGCAAUAGCCACCACCUGCCCUGUGGUUCUGCUCCGGCGAUCAGCGACAACGCAAACAACACGAGAGCAGAGCCU
.(((.(((((....(((......)))(((....))).)))))))).....((((((((((((.......(((....)))........)).)))))))))). ( -39.66, z-score =  -2.73, R)
>droYak2.chr3R 20641649 101 + 28832112
UGCACGGUGGACAAUACGGCACAGUGGGCAAUAGCCACCACCUGCCCUGUGGUUCUGCUCCGGCGAUCAGCGACAACACAAACAACACGAGAGCAGAGCGU
.(((.(((((....(((......)))(((....))).))))))))......(((((((((((((.....))(......)........)).))))))))).. ( -35.20, z-score =  -1.34, R)
>droSec1.super_0 20089756 101 + 21120651
UGCACGGUGGACAAUACGGCACAGUGGGCAAUAGCCACCACCUGCCCUGCGGUUCUGCUCCGGCGAUCAGCGACAACACAAACAACACGAGAGCAGAGCGU
.(((.(((((....(((......)))(((....))).))))))))......(((((((((((((.....))(......)........)).))))))))).. ( -35.20, z-score =  -1.46, R)
>droSim1.chr3R 19570835 101 + 27517382
UGCACGGUGGACAAUACGGCACAGUGGGCAAUAGCCACCACCUGCCCUGCGGUUCUGCUCCGGCGAUCAGCGACAACACAAACAACACGAGAGCAAAGCGU
.(((.(((((....(((......)))(((....))).))))))))...(((.((.(((((((((.....))(......)........)).))))))).))) ( -29.50, z-score =   0.11, R)
>consensus
UGCACGGUGGACAAUACGGCACAGUGGGCAAUAGCCACCACCUGCCCUGCGGUUCUGCUCCGGCGAUCAGCGACAACACAAACAACACGAGAGCAGAGCGU
.(((.(((((....(((......)))(((....))).))))))))......(((((((((((((.....))(......)........)).))))))))).. (-33.98 = -34.02 +   0.04)

alignment

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secondary structure

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dotplot

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Window 1

Location 19,748,003 – 19,748,103
Length 100
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 96.41
Shannon entropy 0.06211
G+C content 0.59081
Mean single sequence MFE -33.07
Consensus MFE -30.86
Energy contribution -31.06
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.21
Structure conservation index 0.93
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.01
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>dm3.chr3R 19748003 100 + 27905053
CACGGUGGACAAUACGGCACAGUGGGCAAUAGCCACCACCUGCCCUGCGGUUCUGCUCCGGCGAUCAGCGACAACACAAACAACACGAGAGCAGAGCGUA-
.(((((((....(((......)))(((....))).))))).........(((((((((((((.....))(......)........)).))))))))))).- ( -32.20, z-score =  -1.02, R)
>droEre2.scaffold_4820 2160078 100 - 10470090
CGCGGUGGACAAUACGACACAGUGGGCAAUAGCCACCACCUGCCCUGUGGUUCUGCUCCGGCGAUCAGCGACAACGCAAACAACACGAGAGCAGAGCCUC-
.(((((((....(((......)))(((....))).))))).)).....((((((((((((.......(((....)))........)).))))))))))..- ( -38.86, z-score =  -2.88, R)
>droYak2.chr3R 20641651 101 + 28832112
CACGGUGGACAAUACGGCACAGUGGGCAAUAGCCACCACCUGCCCUGUGGUUCUGCUCCGGCGAUCAGCGACAACACAAACAACACGAGAGCAGAGCGUCC
......((((.(((.((((..((((((....))..)))).)))).))).(((((((((((((.....))(......)........)).))))))))))))) ( -34.80, z-score =  -1.50, R)
>droSec1.super_0 20089758 100 + 21120651
CACGGUGGACAAUACGGCACAGUGGGCAAUAGCCACCACCUGCCCUGCGGUUCUGCUCCGGCGAUCAGCGACAACACAAACAACACGAGAGCAGAGCGUA-
.(((((((....(((......)))(((....))).))))).........(((((((((((((.....))(......)........)).))))))))))).- ( -32.20, z-score =  -1.02, R)
>droSim1.chr3R 19570837 100 + 27517382
CACGGUGGACAAUACGGCACAGUGGGCAAUAGCCACCACCUGCCCUGCGGUUCUGCUCCGGCGAUCAGCGACAACACAAACAACACGAGAGCAAAGCGUA-
...(((((....(((......)))(((....))).))))).....((((.((.(((((((((.....))(......)........)).))))))).))))- ( -27.30, z-score =   0.35, R)
>consensus
CACGGUGGACAAUACGGCACAGUGGGCAAUAGCCACCACCUGCCCUGCGGUUCUGCUCCGGCGAUCAGCGACAACACAAACAACACGAGAGCAGAGCGUA_
...(((((....(((......)))(((....))).))))).........(((((((((((((.....))(......)........)).))))))))).... (-30.86 = -31.06 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:39:09 2011