| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,745,876 – 19,745,967 |
| Length | 91 |
| Max. P | 0.999409 |
| Location | 19,745,876 – 19,745,967 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 67.94 |
| Shannon entropy | 0.59969 |
| G+C content | 0.57992 |
| Mean single sequence MFE | -39.73 |
| Consensus MFE | -18.22 |
| Energy contribution | -20.92 |
| Covariance contribution | 2.70 |
| Combinations/Pair | 1.36 |
| Mean z-score | -3.14 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.86 |
| SVM RNA-class probability | 0.999409 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19745876 91 + 27905053 UCUGACUCAUUUGACGCGCCGCAAUUGUUGUCG------ACAUGCAAUGCGUUGCCCCAGUAGCAG---CAGUUGCAGCAGCAACAGUUGCUGCCGUUAC ...........(((((.((.(((((((((((.(------...((((((..(((((.......))))---).)))))).).))))))))))).))))))). ( -37.70, z-score = -3.41, R) >droAna3.scaffold_13340 15883987 92 - 23697760 UCUGACUCAAUUGACGCGAUGCAAUUGUUGUCG------GCAGGCAAUGCGCCGCACUAGCAACAGUGACGGAGACAGCAGCAGCAACAGUUGCCGCC-- .(((((.((((((........))))))..))))------)..(((..(((.(((((((......)))).))).....)))(((((....))))).)))-- ( -30.90, z-score = -0.56, R) >droYak2.chr3R 20639285 100 + 28832112 UCUGACUCAUUUGACGCGCCGCAUUUGUUGUUGUUGUGGACAUGCAAUGCGUUGCCCCAGUAGCAGUAGCAGUUGCAGCAGCAACAGUUGCUGCCGUUAC ...........(((((.((.(((.((((((((((((..(...(((.((..(((((....))))).)).))).)..)))))))))))).))).))))))). ( -40.10, z-score = -2.64, R) >droSec1.super_0 20087590 91 + 21120651 UCUGACUCAUUUGACGCGCCGCAAUUGUUGUCG------ACAUGCAAUGCGUUGCCCCAGUAGCAG---CCGUUGCAGCAGCAACAGUUGCCGCCGUUAC ...........(((((.((.(((((((((((.(------...(((((((.(((((.......))))---)))))))).).))))))))))).))))))). ( -40.00, z-score = -4.67, R) >droSim1.chr3R 19568679 91 + 27517382 UCUGACUCAUUUGACGCGCCGCAAUUGUUGUCG------ACAUGCAAUGCGUUGCCCCAGUAGCAG---CCGUUGCAGCAGCAACAGUUGCCGCCGUUAC ...........(((((.((.(((((((((((.(------...(((((((.(((((.......))))---)))))))).).))))))))))).))))))). ( -40.00, z-score = -4.67, R) >anoGam1.chrX 9490058 83 - 22145176 -UCGGCUUGACUGGCCGCCGGCAGGGGCGGUGGUUU---CGGCGCUAUCUGGGGCAUCCGCUUCCG-GCCGGUGGUCGCGGCCGAAGC------------ -((((((....(((((((((((.(((((((..((..---(((......)))..))..)))).))).-))))))))))).))))))...------------ ( -49.70, z-score = -2.90, R) >consensus UCUGACUCAUUUGACGCGCCGCAAUUGUUGUCG______ACAUGCAAUGCGUUGCCCCAGUAGCAG___CAGUUGCAGCAGCAACAGUUGCUGCCGUUAC ...........(((((.((.(((((((((((............((((....))))....((.((((......)))).)).))))))))))).))))))). (-18.22 = -20.92 + 2.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:39:08 2011