| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,735,019 – 19,735,115 |
| Length | 96 |
| Max. P | 0.507652 |
| Location | 19,735,019 – 19,735,115 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 70.94 |
| Shannon entropy | 0.51845 |
| G+C content | 0.36014 |
| Mean single sequence MFE | -21.78 |
| Consensus MFE | -9.68 |
| Energy contribution | -10.08 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.507652 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19735019 96 + 27905053 GGCAUAUAUGCACUGGGUAGGCA-UUCAAGGGAUUACAAGUCUUUGUAAUCUUUGAAGUAAUUAAAAUGGAAGUUAGACUUUGAGUCAUUUAACCAG-------- .(((....))).((((....((.-(((((((.(((((((....)))))))))))))))).................(((.....)))......))))-------- ( -21.40, z-score = -1.40, R) >droEre2.scaffold_4820 2146841 88 - 10470090 -----------GGUAUGUGAACA-UUUAAGGGAUUGCAACACAUUGUAAUCUAUGGAAUAAUUAAAAUGCAGCUUAGACUGCGACCCAUUAAACUAACUU----- -----------(((........(-(((...(((((((((....)))))))))...))))........(((((......))))))))..............----- ( -17.70, z-score = -1.76, R) >droYak2.chr3R 20627788 102 + 28832112 --GGUAAGUAAACUUGCUAA-CAAUUUAGGGGAUUGCAACGCAAUAUAAUCUUUGAAAUAAUUAAAAUGGAGGUUAAACUUUGACCCAUUAAACCAGCUGAGUAG --((((((....))))))..-..((((((.(((((((...)))))....................(((((..((((.....)))))))))...))..)))))).. ( -18.20, z-score = -0.49, R) >droSim1.chr3R 19555784 101 + 27517382 --GGUAUGUGCACUGGGCAGGCAAUUCAAGGGAUUACAACUUAUAGUAAUCUUUGAUGUAAUUAAAAUGGAGGUUACACUUGGAGCCAUUAAACUAGCCAUAG-- --(((...(((.....)))(((..(((((((((((((........)))))))....(((((((........)))))))))))))))).........)))....-- ( -25.10, z-score = -1.48, R) >droSec1.super_0 20076715 101 + 21120651 --GGUAUGUGCACUGGGCAGGCAAUUCAAGGGAUUACAACUCUUUGUAAUCUUUGAAGUAAUUAAAAUGGAGGUUACACUUGGAGCCAUUAUACUAGACUUAG-- --(((((((((.....)))(((..(((((((((((((((....))))))))).....((((((........)))))).)))))))))..))))))........-- ( -26.50, z-score = -2.17, R) >consensus __GGUAUGUGCACUGGGUAGGCAAUUCAAGGGAUUACAACUCAUUGUAAUCUUUGAAGUAAUUAAAAUGGAGGUUACACUUGGAGCCAUUAAACUAGCCU_____ ............((((........(((((((.((((((......)))))))))))))........(((((.((.......))...)))))...))))........ ( -9.68 = -10.08 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:39:06 2011