| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,718,344 – 19,718,438 |
| Length | 94 |
| Max. P | 0.500000 |
| Location | 19,718,344 – 19,718,438 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 59.96 |
| Shannon entropy | 0.78118 |
| G+C content | 0.54098 |
| Mean single sequence MFE | -28.08 |
| Consensus MFE | -8.08 |
| Energy contribution | -7.53 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.67 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.29 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3R 19718344 94 + 27905053 UGAAGGAUUAAAUGACGACACCCCGCCAGGCAUCGGUGGGGGACAGAGCCAUGAGGAAC-UACUCGAGAGCCACUGUCUAGAAUAAUUGUUAGAU ............((((((..(((((((.......)))))))(((((.(((.((((....-..)))).).))..)))))........))))))... ( -30.60, z-score = -2.81, R) >droSim1.chr3R 19538376 93 + 27517382 UGUAGGAUGAAAUGGUGGCACUCCGCCAGGCAUCGGCGGGGGACAGAGCCAAGAGGAAC-UACUCGAGACCCAGUGACUAGAAUAAUGACUAGA- .((((((((...((((((....))))))..))))(((.(....)...)))........)-)))..............((((........)))).- ( -28.60, z-score = -1.43, R) >droSec1.super_0 20059044 94 + 21120651 UGUAGGAUGAAAUGGUGACACUCCGCCAGGCAUCGGCGGGGGACAGAGCCAAGAGGAAC-UACUCGAGACCCAGUGUCUGGAAUAAUGACUAGAA .((((((((...(((((......)))))..))))(((.(....)...)))........)-)))((.((((.....)))).))............. ( -29.60, z-score = -1.39, R) >droYak2.chr3R 20609841 79 + 28832112 ------------CGCUGGCACCC---CAGGAAUCGCUGGAGGGCAGUGCCAUGGGGAAC-GACCUGAGGGCCAGUGGCCAGGAUAAUUACUCGCA ------------(((((((.(((---((((...(((((.....))))))).)))))...-..((...)))))))))((.((........)).)). ( -31.40, z-score = -0.77, R) >droEre2.scaffold_4820 2128748 91 - 10470090 UGGUGAAGGAAGUGCCGGCACCC---CAGGAAUCGGUGGAGGACAGUGCCAUGGGGGAC-GACCCGAAGACCAGUGUCCAGGAUACUGACUCGAU .((((..((.....))..)))).---...((.((((((..(((((.((.(.(.(((...-..))).).)..)).)))))....)))))).))... ( -30.40, z-score = -0.13, R) >droGri2.scaffold_15245 3608199 82 + 18325388 UUCUCGCUCAAAUCUUCACACAAAGCCAACCACUUUUUGUGAAAGAAAUGCUGAGCAUCCGAUUCGAGCUGCACUGUGUCAU------------- .....((((.((((((((((.((((.......)))).))))))....((((...))))..)))).)))).............------------- ( -17.90, z-score = -1.10, R) >consensus UGUAGGAUGAAAUGCUGACACCCCGCCAGGCAUCGGUGGGGGACAGAGCCAUGAGGAAC_GACUCGAGACCCAGUGUCUAGAAUAAUGACUAGA_ ................(((((.............(((.(....)...)))..(((.......)))........)))))................. ( -8.08 = -7.53 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:39:02 2011