| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,715,598 – 19,715,692 |
| Length | 94 |
| Max. P | 0.556942 |
| Location | 19,715,598 – 19,715,692 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 75.57 |
| Shannon entropy | 0.45348 |
| G+C content | 0.47446 |
| Mean single sequence MFE | -26.43 |
| Consensus MFE | -16.39 |
| Energy contribution | -17.39 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.556942 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19715598 94 + 27905053 UUCGAUCGCCUGGCAGUUUCGAUUCGCGGGCUUCUCU-UAAAGUGAAGGCAGUGCCUGCCGUUCCUGUUA---UUGUUUUG--UUGUUAAUUGUCAGCGA .....((((.((((((((.((((..(((((.(((.(.-....).)))(((((...)))))...)))))..---.......)--)))..)))))))))))) ( -25.60, z-score = -0.76, R) >droSim1.chr3R 19535674 94 + 27517382 UUCGAUCGCCUGGCAGUUUCGAUUCGCGGGCUUCUCU-CAAAGCAAAGGCAGUGCCUGCCGUUCCUGUUU---UUGUUUUG--CUGUUAAUUGUCAGCGA .....((((.((((((((..(((..(((((.....))-)(((((((((((((.((.....))..))))))---))))))))--).))))))))))))))) ( -27.20, z-score = -0.64, R) >droSec1.super_0 20056300 94 + 21120651 UUCGAUCGCCUGGCAGUUUCGAUUCGCGGGCUUCUCU-CAAAGCGAAGGCAGUGCCUGCCGUUCCUGUUU---UUGUUUUG--CUGUUAAUUGUCAGCGA .....((((.((((((((..(((..(((((.....))-)(((((((((((((.((.....))..))))))---))))))))--).))))))))))))))) ( -26.90, z-score = -0.15, R) >droYak2.chr3R 20607335 91 + 28832112 UUCGAUUGCCUGGCAGUUAACAGUCGCGGUUUUCUCU-GAAAGCGAAGGCAGUGCCUGCCGUUCCUUUU------GUUUUG--UUGUUAAUUGUCAGCGA .....((((.(((((((((((((((((..((......-))..)))).(((((...))))).........------......--))))))))))))))))) ( -30.80, z-score = -2.75, R) >droEre2.scaffold_4820 2126297 92 - 10470090 UUCGAUCGCCUGGCAGUUUACAGUCGCGGUCUUCUCUCAAAAGCGAAGGCAGUGCCUGCCGUUCUUUUU------GUUUUG--UUGUUAAUUGUCAGCGA .....((((.((((((((.((((((((...............)))).(((((...))))).........------......--)))).)))))))))))) ( -27.26, z-score = -1.66, R) >droAna3.scaffold_13340 3868500 91 - 23697760 --------CCUCACAGUUU-CGUUAUCUGGCUAAUAUCGGAUGGCUGGGAAGUACCGGUCGUUUAAGCCAAGUUUAUUUCGAUUUAUGGAUUGUUAACUA --------....((((((.-(((.((((((((......((((((((((......)))))))))).))))).(.......))))..)))))))))...... ( -20.80, z-score = -0.59, R) >consensus UUCGAUCGCCUGGCAGUUUCCAUUCGCGGGCUUCUCU_CAAAGCGAAGGCAGUGCCUGCCGUUCCUGUU____UUGUUUUG__UUGUUAAUUGUCAGCGA .....((((.((((((((....(((((...............)))))(((((...)))))............................)))))))))))) (-16.39 = -17.39 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:39:01 2011