| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,705,812 – 19,705,920 |
| Length | 108 |
| Max. P | 0.852486 |
| Location | 19,705,812 – 19,705,920 |
|---|---|
| Length | 108 |
| Sequences | 7 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 60.39 |
| Shannon entropy | 0.79275 |
| G+C content | 0.35982 |
| Mean single sequence MFE | -26.24 |
| Consensus MFE | -6.30 |
| Energy contribution | -7.49 |
| Covariance contribution | 1.19 |
| Combinations/Pair | 1.53 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.24 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.852486 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19705812 108 - 27905053 --AGGCAGAUAUGAUAAGCAAAGAUUUGCA----GAUCUAUUUUACUUACAGAUAGCCAGUACAGAUUAAAUGGGUUCAAAAAUCGGCAUAGGUUUAUCUUUAGGAUGCUCAUU --.((((..((.(((((((...(((((...----(((((((((..(((((.........))).))...)))))))))...))))).......)))))))..))...)))).... ( -20.50, z-score = -0.57, R) >droSim1.chr3R 19523716 108 - 27517382 --AGGCAGAUAAGAUAAGCGAAGAUUUACA----GAUCUAUCGUACUUAUUUGAGGGCAGUACAGAUUAACUGGGUUCAAAAGUCGGUAUAGGUUUAUCUUUAGGAUGCUCAUU --.((((...(((((((((..(((((....----)))))((((.((((..(((((..((((........))))..)))))))))))))....))))))))).....)))).... ( -27.80, z-score = -2.71, R) >droSec1.super_0 20046531 108 - 21120651 --AGGCAGAUGAGAUAAGCGAAGAUUUACA----GAUCUAUUGUACUUAUUUGAGGCCAGUUUAGAUUAACUGGGUUUAAAAAUCGGUAUAGGUUUAUCUUUAGGAUGCUCAUU --.((((...(((((((((..(((((....----))))).(((((((..((((((.((((((......)))))).))))))....)))))))))))))))).....)))).... ( -32.80, z-score = -4.20, R) >droYak2.chr3R 20597035 96 - 28832112 --AGGCAAAUAAGAUAAGCAAAGAUUUACA----GAUCUAUUGUA------------AAAUUCAGAUUAACUGGGUUCAAGAAUCGCGAUGAGUUUAUCUUUAGGAUGCUCAUU --.((((...(((((((((..(((((....----)))))(((((.------------.....(((.....)))((((....)))))))))..))))))))).....)))).... ( -19.80, z-score = -1.36, R) >droEre2.scaffold_4820 2116030 108 + 10470090 --AGGCAGAUAAGAUAAGCAAAGAUUUACA----GAUCUAUUGUACUUAUUUCAGGCCAGUUGAGAUUAACUGGGUUCAAGAAUCAGUAUAAGCUUAUCUUUAGGAUGCUCAUU --.((((...(((((((((..(((((....----))))).(((((((.((((.((.(((((((....))))))).))...)))).)))))))))))))))).....)))).... ( -33.40, z-score = -4.19, R) >droAna3.scaffold_13340 3859929 104 + 23697760 -------GAUAAGAUAGGUAGGGAGUUAUACGAUGGCCUAUUGUGAUCUCUUAUUAAGAGGAUUAAGAGCUCAGAGUUCAGA--GAUCAAAGAUCUAAUUCAGAGACCUGCUU- -------........((((((((((((.(((((((...))))))).(((((.....)))))......))))).(((((...(--((((...)))))))))).....)))))))- ( -24.90, z-score = -0.30, R) >droPer1.super_0 4321892 92 + 11822988 UAGGCCUGAUAAGAUUAGCUUGGAUUUAUG----GCCUUAUUAUGAUUGUU--UUCGGAUCAUAGCCGGUUCGGGGCUGGGA-UUAUCUCAUCUUCAUU--------------- .(((...(((((..(((((((.((....((----((.....(((((((...--....)))))))))))..)).)))))))..-)))))...))).....--------------- ( -24.50, z-score = -0.59, R) >consensus __AGGCAGAUAAGAUAAGCAAAGAUUUACA____GAUCUAUUGUACUUAUUU_AGGCCAGUACAGAUUAACUGGGUUCAAGAAUCGGCAUAGGUUUAUCUUUAGGAUGCUCAUU ...((((...(((((((((...............((((((...............................))))))...............))))))))).....)))).... ( -6.30 = -7.49 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:39:01 2011