| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,675,699 – 19,675,794 |
| Length | 95 |
| Max. P | 0.508155 |
| Location | 19,675,699 – 19,675,794 |
|---|---|
| Length | 95 |
| Sequences | 8 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 70.57 |
| Shannon entropy | 0.57711 |
| G+C content | 0.34446 |
| Mean single sequence MFE | -21.54 |
| Consensus MFE | -5.25 |
| Energy contribution | -4.50 |
| Covariance contribution | -0.75 |
| Combinations/Pair | 1.64 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.24 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.508155 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19675699 95 + 27905053 --AAUGAAAUUAAGUGUGUGUGUGAACG-CCACACAUAAAAUAUCGAAAAAAUUAAUUAUUUGGGCCGC-AACUGAAGCUCAAUGACAUUGUACAAUAA --((((.......(((((.(((....))-)))))).........................((((((..(-....)..))))))...))))......... ( -18.80, z-score = -1.15, R) >droSim1.chr3R 19497993 93 + 27517382 --AAUGAAAUUGAGUGUGUGU--GAACG-ACACACAUAAAAUAUCGAACAAAUUAAUUAUUUGGGCCGC-AACUGAAGCUCAAUGACAUUGUACAAUAA --((((..(((((((((((((--(....-.)))))))........(..(((((.....)))))..)...-.......)))))))..))))......... ( -21.40, z-score = -2.31, R) >droSec1.super_0 20024402 93 + 21120651 --AAUGAAAUUGAGUGUGUGUG--AACG-ACACACAUAAAAUAUCGAACAAAUUAAUUAUUUGGGCCGC-AACUGAAGCUCAAUGACAUUGUACAAUAA --((((..((((((((((((((--....-.)))))))........(..(((((.....)))))..)...-.......)))))))..))))......... ( -21.40, z-score = -2.31, R) >droEre2.scaffold_4820 2092929 93 - 10470090 --GAUGAUAUUGAGUGUGUGU--AAACG-ACACACAUAAUAUAUCGAACAAAUGAAUUACUUGGGCUGC-AACUGAAGCUCAAUGACAAUGUACAAUAA --..((((((((.((((((((--.....-)))))))).......................(((((((..-......)))))))...)))))).)).... ( -22.70, z-score = -2.88, R) >droYak2.chr3R 20573938 95 + 28832112 --AAUGAUAUUGAGUGUGUGUUCAAACG-ACACACAUUAAAUAUCGAACACAUUAAUGAUUUGGGCUGC-AACUGAAGCUCAAUGACAUUGUACAAUAA --..(((((((.((((((((((.....)-))))))))).))))))).......(((((..(((((((..-......)))))))...)))))........ ( -28.80, z-score = -4.16, R) >droAna3.scaffold_13340 3838093 99 - 23697760 ACAAUGAUAAUAAUGGUGUGGCUACACACAAAAAUAUUCAAAAAAGAAACAUUUAUUUAGAGGGGCCUCGAAGGGAGGUCCCAGAACAUUGUACAAUAA ((((((.(((.(((((((((....))))).......(((......))).))))...)))..((((((((.....))))))))....))))))....... ( -30.40, z-score = -5.10, R) >dp4.chr2 12920473 92 + 30794189 --AAUUGUAAUGCAAAUAUGA--AAAUGAUACAAUAAAUCAAAUCAGAUAAACC--UUAGCAGGGCCGC-AACUGACGCCCAUUGGACUUGUACAAUAG --.((((((.(((...(((..--..))).........(((......))).....--...)))((((..(-....)..))))..........)))))).. ( -14.90, z-score = -0.69, R) >droPer1.super_0 4286999 92 - 11822988 --AAUUGUAAUGCAAAUAUGA--AGAUGAUACAAUAAAUCAAAUCAGAUAAACC--UUAGCAGGGCCGC-AACUGACGCCCAUUGGACUUGUACAAUAG --.((((((.(((........--...((((............))))........--...)))((((..(-....)..))))..........)))))).. ( -13.95, z-score = -0.14, R) >consensus __AAUGAUAUUGAGUGUGUGU__AAACG_ACACACAUAAAAUAUCGAACAAAUUAAUUAUUUGGGCCGC_AACUGAAGCUCAAUGACAUUGUACAAUAA ..((((.......((.(((......))).))..............................(((((...........)))))....))))......... ( -5.25 = -4.50 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:38:56 2011