| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,653,249 – 19,653,364 |
| Length | 115 |
| Max. P | 0.964793 |
| Location | 19,653,249 – 19,653,364 |
|---|---|
| Length | 115 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 92.63 |
| Shannon entropy | 0.16138 |
| G+C content | 0.35091 |
| Mean single sequence MFE | -28.57 |
| Consensus MFE | -25.19 |
| Energy contribution | -25.05 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.28 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.74 |
| SVM RNA-class probability | 0.964793 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19653249 115 + 27905053 AUGACGACGUCAAAGUCGAAGAUGGGCAUGUGAUAAAAUAAAUUACGGGCAGAUUAGUGCGAAUUUAAUUAUCGUUUGUUCCUUUGAUGUCGC-----UAAGUAAAUAAAGGGAAUAAAU ....(((((((((((........(((((..((((((..((((((.((.((......)).)))))))).))))))..)))))))))))))))).-----...................... ( -28.80, z-score = -2.59, R) >droSim1.chr3R 19484699 115 + 27517382 AUGACGACGUCAAAGUCGAAGAUGGGCAUGUGAUAAAAUAAAUUACGGGCAGAUUAGUGCGAAUUUAAUUAUCGUUUGUUCCUUUGAUGUCGC-----UAAGCAAAUAAAGGGAAUAAAU ....(((((((((((........(((((..((((((..((((((.((.((......)).)))))))).))))))..)))))))))))))))).-----...................... ( -28.80, z-score = -2.36, R) >droSec1.super_0 20011155 115 + 21120651 ACGACGACGUCAAAGUCGAAGAUGGGCAUGUGAUAAAAUAAAUUACGGGCAGAUUAGUGCGAAUUUAAUUAUCGUUUGUUCCUUUGAUGUCGC-----UAAGUAAAUAAAGGGAAUAAAU ..(.(((((((((((........(((((..((((((..((((((.((.((......)).)))))))).))))))..)))))))))))))))))-----...................... ( -29.00, z-score = -2.44, R) >droYak2.chr3R 20560273 115 + 28832112 AUGACGACGUCAAAGUCGAAGAUGGGCAUGUGAUAAAAUAAAUUACGGGCAGAUUAGUGCGAAUUUAAUUAUCGUUUGUUCCUUUGAUGUCGC-----CAAGUAAAUAAAGGGAAUAAAU .((.(((((((((((........(((((..((((((..((((((.((.((......)).)))))))).))))))..)))))))))))))))).-----)).................... ( -30.20, z-score = -2.85, R) >droEre2.scaffold_4820 2079521 115 - 10470090 AUGACGACGUCAAAGUCGAAGAUGGGCAUGUGAUAAAAUAAAUUACGGGCAGAUUAGUGCGAAUUUAAUUAUCGUUUGUUCCUUUGAUGUCGC-----UAAGUAAAUAAAGGGAAUAAAU ....(((((((((((........(((((..((((((..((((((.((.((......)).)))))))).))))))..)))))))))))))))).-----...................... ( -28.80, z-score = -2.59, R) >droAna3.scaffold_13340 3821858 117 - 23697760 AUGACGACGUCAAAGUCGAAGAUGGGUAUGUGAUAAAAUAAAUUACGGGCAGAUUAGUGCGAAUUUAAUUAUCGUUUGUUCCUUUGAUGUCGCG---CUAAGUAAAUAAAGGGAAUAAAU ..(.(((((((((((........(..((..((((((..((((((.((.((......)).)))))))).))))))..))..))))))))))))).---....................... ( -26.70, z-score = -1.57, R) >dp4.chr2 12906935 120 + 30794189 AUGACGACGUCAAAGUCGAAGAUGGGCAUGUGAUAAAAUAAAUUACGGCCAGAUUAGUGCGAAUUUAAUUAUCAUUUGUUCCUUUGAUGUCGCCGCGCAGAGUAAAUAAACGAAAUAAAU ..(.(((((((((((....((((((((.((((((.......))))))))).((((((.......))))))..)))))....))))))))))).).......................... ( -28.70, z-score = -1.57, R) >droPer1.super_0 4271666 120 - 11822988 AUGACGACGUCAAAGUCGAAGAUGGGCAUGUGAUAAAAUAAAUUACGGCCAGAUUAGUGCGAAUUUAAUUAUCAUUUGUUCCUUUGAUGUCGCCGCGCAGAGUAAAUAAACGAAAUAAAU ..(.(((((((((((....((((((((.((((((.......))))))))).((((((.......))))))..)))))....))))))))))).).......................... ( -28.70, z-score = -1.57, R) >droWil1.scaffold_181089 5857453 116 - 12369635 AUGACGACGUCAAAGCCGAAGAUGGGCAUGUGAUAAAAUAAAUUACGGCCAGAUUAGUGCGAAUUUAAUUAUCAUUUGUUCCUUUGAUGUCGGG---CAAAAUAAAUACAGAUAUCAAA- .((.(((((((((((....((((((((.((((((.......))))))))).((((((.......))))))..)))))....)))))))))))..---))....................- ( -29.70, z-score = -2.52, R) >droMoj3.scaffold_6540 21065548 117 - 34148556 AUGAGGACGUCAAAGUCGAAGAUGGGCAUGUGAUAAAAUAAAUUACGGGCAGAUUAGUGCGAAUUUAAUUAUCAUUUGUUCCUUUGAUGUAGCU---CUGGGUAAAUAAAUAGAAUAAAU ..(((.(((((((((........(((((.(((((((..((((((.((.((......)).)))))))).))))))).))))))))))))))..))---)...................... ( -28.70, z-score = -2.78, R) >droVir3.scaffold_13047 839618 117 - 19223366 AUGACGACGUCAAAGUCGAAGAUGGGCAUGUGAUAAAAUAAAUUACGGGCAGAUUAGUGCGAAUUUAAUUAUCAUUUGUUCCUUUGAUGUAGCC---ACGGGUAAAUAAAUAGAAUAAAU ......(((((((((........(((((.(((((((..((((((.((.((......)).)))))))).))))))).)))))))))))))).(((---...)))................. ( -25.80, z-score = -1.61, R) >droGri2.scaffold_15074 6316309 117 + 7742996 AUGACGACGUCAAAGUCGAAGAUGGGCAUGUGAUAAAAUAAAUUACGGGCAGAUUAGUGCGAAUUUAAUUAUCAUUUGUUCCUUUGAUGUUGCG---AGGAGUAAAUAAAUAGAAUAAAU .((.(((((((((((........(((((.(((((((..((((((.((.((......)).)))))))).))))))).))))))))))))))))))---....................... ( -28.90, z-score = -2.85, R) >consensus AUGACGACGUCAAAGUCGAAGAUGGGCAUGUGAUAAAAUAAAUUACGGGCAGAUUAGUGCGAAUUUAAUUAUCAUUUGUUCCUUUGAUGUCGC_____UAAGUAAAUAAAGGGAAUAAAU ....(((((((((((........(..((..((((((..((((((.((..(......)..)))))))).))))))..))..))))))))))))............................ (-25.19 = -25.05 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:38:54 2011