| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,443,771 – 8,443,848 |
| Length | 77 |
| Max. P | 0.963151 |
| Location | 8,443,771 – 8,443,848 |
|---|---|
| Length | 77 |
| Sequences | 6 |
| Columns | 78 |
| Reading direction | reverse |
| Mean pairwise identity | 61.11 |
| Shannon entropy | 0.74513 |
| G+C content | 0.39054 |
| Mean single sequence MFE | -13.44 |
| Consensus MFE | -5.71 |
| Energy contribution | -6.77 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.53 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.72 |
| SVM RNA-class probability | 0.963151 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8443771 77 - 23011544 CUCGUCUUCAAUCGCUGCAUAGUCUUUUCG-GAGUUUUCUGUGCUUCCUAAGUCGCAUUUUCAUAGUUGGAAAUGUAU ...(.(((........((((((.(((....-)))....)))))).....))).)(((((((((....))))))))).. ( -16.32, z-score = -2.02, R) >droSim1.chr2L 8229856 61 - 22036055 ----------------GCAUAGUCUUUUCG-AAGUUUUCUGUGCUUUCCAAGUCGCAUUUUCAUAGUUGGAAAUGUAU ----------------((((((.(((....-)))....))))))..........(((((((((....))))))))).. ( -15.60, z-score = -3.50, R) >droSec1.super_3 3940035 77 - 7220098 CUCGUCUUCAAUCGCUGCAUAGUCUUUUCG-CAGUUUUCUGUGCUUUCCAAGUCGCAUUUUCAUAGUUGGAAAUGUAU ...(.(((........((((((.((.....-.))....)))))).....))).)(((((((((....))))))))).. ( -14.72, z-score = -1.82, R) >droYak2.chr2L 11081413 69 - 22324452 --------CAAUCGUUGUAUAGUUUUUUGA-AACUCUUUUGCGGCUUCCACGCCGCAUUUUCAAAUUUGGAAAUGUAU --------....((((...(((...(((((-((......((((((......)))))).))))))).)))..))))... ( -15.10, z-score = -1.92, R) >droEre2.scaffold_4929 17353194 71 - 26641161 UUCGGCUUCAAUCUUUUUACAGUUUUUUCG-GACUCUUCUGUGGCUU------CGCAUUUUCAAAUUGGGAAGUGUAU ....................((((....((-((....)))).)))).------.((((((((......)))))))).. ( -9.70, z-score = 0.24, R) >droWil1.scaffold_181132 337222 69 - 1035393 GUCGUCUCCAUUGGCUCCAAUUUCAUGUCACGAUUCUCGCACGUUUCUGAAUCCGUAGAAUU--AGUUGAA------- ...(((......)))..(((((.....(((((((((............)))).))).))...--)))))..------- ( -9.20, z-score = 0.73, R) >consensus _UCGUCUUCAAUCGCUGCAUAGUCUUUUCG_GAGUCUUCUGUGCUUUCCAAGUCGCAUUUUCAUAGUUGGAAAUGUAU ................((((((................))))))..........(((((((((....))))))))).. ( -5.71 = -6.77 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:26:03 2011