Locus 11229

Sequence ID dm3.chr3R
Location 19,615,323 – 19,615,405
Length 82
Max. P 0.677858
window15428

overview

Window 8

Location 19,615,323 – 19,615,405
Length 82
Sequences 4
Columns 82
Reading direction reverse
Mean pairwise identity 72.97
Shannon entropy 0.44222
G+C content 0.54495
Mean single sequence MFE -13.43
Consensus MFE -7.07
Energy contribution -6.51
Covariance contribution -0.56
Combinations/Pair 1.50
Mean z-score -1.62
Structure conservation index 0.53
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.40
SVM RNA-class probability 0.677858
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 19615323 82 - 27905053
GACGCACCCCCGCCAUCCACCAACGUCGUCCCACCGGAAUCCCCUUCUUCUAAGCGCUUGUGCAACCAAUCCAUUUCAUACG
...((((...(((...............(((....)))...............)))...))))................... ( -11.21, z-score =  -1.80, R)
>droSim1.chr3R 19446828 82 - 27517382
GACGCACCCCCGCCAUCCACCAACGUCGUCCCACCGGAAUCCCCUUCUUCUAAGCGCUUGUGCAACCCAUCCAUUUCAUACG
...((((...(((...............(((....)))...............)))...))))................... ( -11.21, z-score =  -1.88, R)
>droSec1.super_0 19973493 82 - 21120651
GACGCACCCCCGCCAUCCACCAUCGUCGUCCCACCGGAAUCCCCUUCUUCUAAGCGCUUGUGCAACCCAUCCAUUUCAUACG
...((((...(((...............(((....)))...............)))...))))................... ( -11.21, z-score =  -1.91, R)
>droGri2.scaffold_15074 6269550 78 - 7742996
GCAUUGCCACUGAUAAUGAUGCGCGUCGUUCUACGUGAG----AUUUAUCUAACUGCAAGCACAGCGUAUAAAGCUGAUAAG
((.((((....(((((.....(((((......)))))..----..))))).....)))))).((((.......))))..... ( -20.10, z-score =  -0.91, R)
>consensus
GACGCACCCCCGCCAUCCACCAACGUCGUCCCACCGGAAUCCCCUUCUUCUAAGCGCUUGUGCAACCCAUCCAUUUCAUACG
...((((...(((...............(((....)))...............)))...))))................... ( -7.07 =  -6.51 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:38:50 2011