| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,536,088 – 19,536,196 |
| Length | 108 |
| Max. P | 0.702582 |
| Location | 19,536,088 – 19,536,196 |
|---|---|
| Length | 108 |
| Sequences | 12 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 71.77 |
| Shannon entropy | 0.60339 |
| G+C content | 0.44574 |
| Mean single sequence MFE | -27.78 |
| Consensus MFE | -11.77 |
| Energy contribution | -9.84 |
| Covariance contribution | -1.93 |
| Combinations/Pair | 1.61 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.702582 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19536088 108 - 27905053 -----AAUGUUGGAAUAACAUUAGCUCACCCCAUCCGAUUGAUGUCCAGAAGUCUUUGAGUCACACAGCGGUUAUUCAUGAUCUCCGGAAAUAGAUUGUAGUGGGUGAAGUAG -----(((((((...))))))).((((((((....(((((....(((.((..((..(((((.((......)).))))).))..)).)))....)))))....))))).))).. ( -29.00, z-score = -1.41, R) >droGri2.scaffold_14830 4786789 105 - 6267026 --------UGUGCUUCAUUAGCUACUCACCCCAACCGAUUAAUAUCCAGCAAUCGCUGUGUAAUAAACCGAUUGCUCAUAAACUCCGGGAACAGAUUAUAGCUUGUGAAAUAG --------.....(((((.(((((((...(((....(((....))).((((((((..((.......))))))))))..........)))...))....))))).))))).... ( -22.70, z-score = -2.11, R) >droVir3.scaffold_13047 4024883 104 + 19223366 ---------AUGCCUCGCCGGCUACUUACCCCAAUCGAUUGAUAUCCAGCAGUCGCUGUGUGAUAUAGCGAUUGCUCAUAAUUUCUGGAAAGAGAUUAUAGUAGGUGAAGUAA ---------.(((.(((((.((((.......................(((((((((((((...)))))))))))))..((((((((....)))))))))))).))))).))). ( -37.50, z-score = -4.46, R) >droMoj3.scaffold_6540 15473145 113 + 34148556 GAGCUGUUCACAUUUUCCCAAUUACUUACCCCAAUCUAUUGACAUCCAGUAGCCGCUGUGUGAUAUAUCGGUUGCUCAUAAUUUCUGGGAAAAGAUUAUAGUAGGAGAAGUAA ..(((((.....((((((((...........(((....)))......((((((((.((((...)))).)))))))).........))))))))....)))))........... ( -24.10, z-score = -0.53, R) >droWil1.scaffold_181108 1085694 112 + 4707319 -AUUGUUUUUGGCAAAAACGAAAACUUACCCCAAGCGAUUAAUGUCCAACAGUCGUUGCGUCACACAGCGAUUAUUCAUAAUCUCGGGAAAGAGAUUAUAAUAGGUAAAAUAA -...(((((((.......)))))))(((((....(.(((....))))...((((((((.......))))))))....((((((((......))))))))....)))))..... ( -26.10, z-score = -2.51, R) >droSim1.chr3R 19366282 108 - 27517382 -----AAUGAUGUUUAACCAUUUGCUCACCCCAUGCGAUUGAUGUCCAGAAGUCUUUGCGUCACACAGCGGUUAUUCAUGAUCUCCGGAAAUAGGUUGUAGUGGGUGAAGUAG -----.................(((((((((..(((((((....(((.((..((...((........))((....))..))..)).)))....)))))))..))))).)))). ( -27.60, z-score = -0.56, R) >droSec1.super_0 19894516 108 - 21120651 -----AAUGAUGUUUAACCAUUUGCUCACCCCAUGCGAUUGAUGUCCAAAAGUCUCUGCGUCACACAGCGGUUAUUCAUGAUCUCCGGAAAUAGGUUGUAGUGGGUGAAGUAG -----.................(((((((((..(((((((....(((..........((........))(((((....)))))...)))....)))))))..))))).)))). ( -26.60, z-score = -0.42, R) >droYak2.chr3R 20437999 99 - 28832112 --------------AUGACAUUAGCUCACCCCAUGCGAUUGAUGUCCAGCAGUCUUUGUGUCACACAGCGGUUAUUCAUGAUCUCCGGAAAAAGGUUGUAGUGGGUGAAGUAG --------------.........((((((((..(((((((....(((........(((((...))))).(((((....)))))...)))....)))))))..))))).))).. ( -25.40, z-score = -0.28, R) >droEre2.scaffold_4820 1961779 104 + 10470090 ---------AUGGCAUGAACCUAGCUCACCCCAUGCGAUUGAUGUCCAGCAGUCUUUGCGUCACACAGCGGUUAUUCAUGAUCUCCGGAAAUAGGUUGUAGUGGGUGAAGUAG ---------...........(((..((((((..(((((((....(((.((((...))))..........(((((....)))))...)))....)))))))..))))))..))) ( -26.20, z-score = 0.55, R) >droAna3.scaffold_13340 3702233 96 + 23697760 -----------------AAAGGAUCUCACCCCAAGCGAUUGAUGUCCAGCAAUCGUUGCGUCACACAUCGGUUGUUCAUUAUCUCCGGAAAGAGGUUGUAGUGCGUGAAAUAC -----------------........((((....((((((((((((...(((.....))).....))))))))))))((((((..((.......))..)))))).))))..... ( -23.80, z-score = -0.60, R) >dp4.chr2 3033570 93 - 30794189 --------------------AUGGCUUACCCCAAGCGGUUGAUGUCCAGCAGUCGCUGGGUCACACACCGAUUGUUCAUGAUCUCCGGAAAGAGGUUGUAGUGGGUAAAGUAG --------------------...(((((((((((.((((((.((((((((....)))))).)))).)))).)))...(..(((((......)))))..)...)))).)))).. ( -32.00, z-score = -1.90, R) >droPer1.super_7 3129391 93 + 4445127 --------------------AUGGCUUACCCCAAGCGGUUGAUGUCCAGCAGUCGCUGGGUAACACACCGAUUGUUCAUGAUCUCCGGAAAGAGGUUGUAGUGGGUAAAGUAC --------------------...(((((((((((.((((((.(..(((((....)))))..).)).)))).)))...(..(((((......)))))..)...)))).)))).. ( -32.40, z-score = -2.16, R) >consensus _________AUG__UUAACAAUAGCUCACCCCAAGCGAUUGAUGUCCAGCAGUCGCUGCGUCACACAGCGGUUAUUCAUGAUCUCCGGAAAGAGGUUGUAGUGGGUGAAGUAG .........................(((((......(((((.((((((((....)))).)....))).)))))(((.(((((((........)))))))))).)))))..... (-11.77 = -9.84 + -1.93)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:38:45 2011