| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,486,415 – 19,486,520 |
| Length | 105 |
| Max. P | 0.574112 |
| Location | 19,486,415 – 19,486,520 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 71.11 |
| Shannon entropy | 0.53585 |
| G+C content | 0.43617 |
| Mean single sequence MFE | -27.51 |
| Consensus MFE | -14.86 |
| Energy contribution | -16.33 |
| Covariance contribution | 1.47 |
| Combinations/Pair | 1.26 |
| Mean z-score | -0.99 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.574112 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19486415 105 - 27905053 CGGUUGGAGCCAAUUCCCCUUGGCUUCGCCUAAUGAGUACGGCUUAAAGGUGUCUUUUUGCAUACCCUAACUGGUGUAACUUAAAGCUUCAA--AGAAACGAGCUGA------------- .(((.((((((((......)))))))))))...(((((...((..((((....))))..))(((((......))))).))))).(((((...--......)))))..------------- ( -28.70, z-score = -0.98, R) >droAna3.scaffold_13340 3653210 85 + 23697760 UGGUCGGAGUCAAUUCGGGUUUGGUUUGCCUAAUGAGUAAUUGUCGGAGAAACCUUAGCACACACUCC-ACAAGCUGGCUUUAAGG---------------------------------- .((((((.(.((((((..(((.((....)).)))..).))))).)((((...............))))-.....))))))......---------------------------------- ( -16.96, z-score = 1.26, R) >droEre2.scaffold_4820 1911635 120 + 10470090 CGGUUGGAGCCAAUUCCGCUCGGCUUCGCCUAAUGAGUAAUGCUUUAAGGUGUCUUUUUGCAUACCCUAACUUGUGUAACUUAAAGCUUUAAGUGAACACGAACUGAGGUACUCGACUAG .(((.((((((..........)))))))))...((((((((((...(((....)))...))))..(((...((((((.((((((....))))))..))))))....)))))))))..... ( -33.90, z-score = -1.91, R) >droYak2.chr3R 20383146 120 - 28832112 CGGUUGGAGCCAAUUCCACUCGGCUUCGCCUAAUGAGUAAUGCUUAAAGUUGUCUUUUUGCAUACCCUAACUUGUGUAACUGAAGGCUUUAAGUGAAAACGAAGUGAUUAACAUGAAAUG ((..(((((....)))))..))((((((.((....))....(((((((((..((...(((((((........)))))))..))..))))))))).....))))))............... ( -28.40, z-score = -1.36, R) >droSec1.super_0 19843624 105 - 21120651 CGGUUGGAGCCAAUUCCCCUUGGCUUCGCCUAAUGAGUAAGGUUUAAAGGUGUCUUUUUGCAUACCCUAACUGGUGUAACUUAAAGCUUCAA--AGAAACGAAGUUA------------- .(((.((((((((......)))))))))))...(((((...((..((((....))))..))(((((......))))).))))).((((((..--......)))))).------------- ( -28.80, z-score = -1.54, R) >droSim1.chr3R 19316290 105 - 27517382 CGGUUGGAGCCAAUUCCCCUUGGCUUCGCCUAAUGAGUAAGGUUUAAAGGUGUCUUUUUGCAUACCCUAACUGGUGUAACUUAAAGCUUCAA--AGAAACCAACUGA------------- (((((((((((((......))))))))((((........)))).....(((.(((((..(((((((......)))))........))...))--))).)))))))).------------- ( -28.30, z-score = -1.38, R) >consensus CGGUUGGAGCCAAUUCCCCUUGGCUUCGCCUAAUGAGUAAGGCUUAAAGGUGUCUUUUUGCAUACCCUAACUGGUGUAACUUAAAGCUUCAA__AGAAACGAACUGA_____________ .((.(((((((((......)))))))))))...(((((...((..((((....))))..))(((((......))))).)))))..................................... (-14.86 = -16.33 + 1.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:38:41 2011