| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,484,827 – 19,484,927 |
| Length | 100 |
| Max. P | 0.828997 |
| Location | 19,484,827 – 19,484,927 |
|---|---|
| Length | 100 |
| Sequences | 8 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 76.89 |
| Shannon entropy | 0.41484 |
| G+C content | 0.33349 |
| Mean single sequence MFE | -26.16 |
| Consensus MFE | -12.20 |
| Energy contribution | -12.53 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.828997 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 19484827 100 + 27905053 ---------UUGUGCAAGCCAAAUCCGCAACGGAAGUUGCAGGCAAUCAGCAUUUUUGUU---GCUACUGAAA------UUGCAAUGAAAUAUAUUUUAUAAGAAA-UUUGUACAGCUU ---------((((((((((.....(((((((....))))).))......))..(((..((---((........------..))))..)))................-.))))))))... ( -26.10, z-score = -1.74, R) >droSim1.chr3R 19314680 101 + 27517382 ---------UUGUGCAAGCCAAAUCCGCAACGGAAGUUGCAGGCAAUCAGCAUUUUUGUU---GCUACUGAAAA-----UUGCAAUGAAAUAUAUUUUAUAAGAAA-UUUGUACAGCUU ---------((((((((((.....(((((((....))))).))......))..(((..((---((.........-----..))))..)))................-.))))))))... ( -26.00, z-score = -1.69, R) >droSec1.super_0 19842084 101 + 21120651 ---------UUGUGCAAGCCAAAUCCGCAACGGAAGUUGCAGGCAAUCAGCAUUUUUGUU---GCUACUGAAAA-----UUGCAAUGAAAUAUAUUUUAUAAGAAA-UUUGUACAGCUU ---------((((((((((.....(((((((....))))).))......))..(((..((---((.........-----..))))..)))................-.))))))))... ( -26.00, z-score = -1.69, R) >droYak2.chr3R 20381501 101 + 28832112 ---------UUGUGCAAGCCAAAUCCGCAACGGAAGUUGCAGGCAAUCAGCAUUUUUGUU---GUUACUGAAA------UUGCAAUGAAAUAUGUUUUAUAAGAAAAUUUGUACAGCUU ---------(((((((((((......(((((....))))).)))....((((((((..((---((........------..))))..))).)))))............))))))))... ( -26.80, z-score = -1.89, R) >droEre2.scaffold_4820 1910007 101 - 10470090 ---------UUGUGCAAGCCAAAUCCGCAGCGGAAGUUGCAGGCAAUCAGCAUUUUUGUU---GUUACUGAAA------UUGCAAUGAAAUAUGUUUUAUAAGAAAAUUUGUACAGCUU ---------(((((((((((......(((((....))))).)))....((((((((..((---((........------..))))..))).)))))............))))))))... ( -26.80, z-score = -1.52, R) >droAna3.scaffold_13340 3652090 105 - 23697760 UUUCAUCCAUUUUGCCAACUAAGCCCGCAACGGAAGUUGCAGGCAAUCAGCAUUUUU-------UUGUUGUAA------UUGCAAUAAAAUAUAUUGUAUAAGAAA-UUUGUACAGUUU ...........((((.......(((.(((((....))))).)))...(((((.....-------.)))))...------..))))........((((((((((...-)))))))))).. ( -28.10, z-score = -3.62, R) >dp4.chr2 2983127 102 + 30794189 ---------UUGUAUAAACAAAAUCCGCAACGGAAGUUGCAACCAAUCGGCAUUUUUAGUUGUAUUUUCGCAAUUGUAAUUGCAAUAAAAUAUCUAUUGAAAAAAGUGCUU-------- ---------((((....)))).....(((((....)))))........((((((((((((.(((((((.(((((....)))))...)))))))..)))))))...))))).-------- ( -23.90, z-score = -2.75, R) >droPer1.super_7 3078695 102 - 4445127 ---------UUGUAUAAACAAAAUCCGCAACGGAAGUUGCAACCAAUCGGCAUUUUUAGUUGUAUUUUUGCAAUUGUAAUUGCAAUAAAAUAUCUAUUGAAAAAAGUGCUU-------- ---------((((....)))).....(((((....)))))........((((((((((((.(((((((((((((....))))))..)))))))..)))))))...))))).-------- ( -25.60, z-score = -2.97, R) >consensus _________UUGUGCAAGCCAAAUCCGCAACGGAAGUUGCAGGCAAUCAGCAUUUUUGUU___GUUACUGAAA______UUGCAAUGAAAUAUAUUUUAUAAGAAA_UUUGUACAGCUU ............(((((.........(((((....)))))..((.....))............................)))))................................... (-12.20 = -12.53 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:38:40 2011