| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,470,218 – 19,470,333 |
| Length | 115 |
| Max. P | 0.517542 |
| Location | 19,470,218 – 19,470,333 |
|---|---|
| Length | 115 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 67.11 |
| Shannon entropy | 0.59065 |
| G+C content | 0.62956 |
| Mean single sequence MFE | -37.05 |
| Consensus MFE | -22.42 |
| Energy contribution | -22.82 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.41 |
| Mean z-score | -0.40 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.517542 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19470218 115 + 27905053 CGAGGGGCUAGGGGCUAGCCGCACUAUCUGCUUUCCCAUGGGGCACCCUCAUCCGGAUCCUCCCAGGAUCCUUCCCCUGCAUACCUACCCCCCCCCCCUUGGAUGCAACGCCCAC ....((((.(((((...((((((.....)))...((...)))))..........((((((.....))))))..)))))((((.((...............))))))...)))).. ( -38.56, z-score = -0.22, R) >droSim1.chr3R 19299544 106 + 27517382 CGAGGGGCUAGGGGCUAGCCGCACUAUCUGCUUUCCCAUGGGGCUCCCCCAUCCGGAUCCUCCCAGGAUCCAACCC-U-CA-------CCUUCCCCCCUCGGAUGCAACGCCCAC (((((((...((((..(((((((.....)))...((...)))))).))))....((((((.....)))))).....-.-..-------......))))))).............. ( -40.10, z-score = -1.36, R) >droSec1.super_0 19827478 107 + 21120651 CGAGGGGCUAGGGGCUAGCCGCACUAUCUGCUUUCCCAUGGGGCUCCCCCAUCCGGAUCCUCCCAGGAUCCAACCCCU-CA-------CCUCCCCCCCUCGGAUGCAACGCCCAC (((((((...((((..(((((((.....)))...((...)))))).))))....((((((.....)))))).......-..-------......))))))).............. ( -40.10, z-score = -1.17, R) >droEre2.scaffold_4820 1894130 98 - 10470090 CGAGGGGCCAGGGGCUGGCCGUACUAUCUGCUUUCCCAUGGGGUUGACCCAUCCGGAUCC-CCCAGGAUGCC----------------CCACCCCCCUGCGGAGGCAACGCCCAC ...((((((((...))))))........(((((((.((.((((.((...(((((((....-.)).)))))..----------------.)).)))).)).)))))))....)).. ( -39.90, z-score = 0.43, R) >droVir3.scaffold_13047 9067728 111 + 19223366 CGAGGGAAGACCGCAACAUCCCCCUAUC--CCUUGGCAUGUGGGUAAUAAAU--AGCUGCAGCAAGUUUCCUUCUGUUGCAAUUCAAGUGCAUUGCAUUUCAUUGCAUGACUGAC .((((((((...((........((....--....))..((..(.((.....)--).)..))))...))))))))...((((((..((((((...)))))).))))))........ ( -26.60, z-score = 0.34, R) >consensus CGAGGGGCUAGGGGCUAGCCGCACUAUCUGCUUUCCCAUGGGGCUCCCCCAUCCGGAUCCUCCCAGGAUCCAACCC_U_CA_______CCCCCCCCCCUCGGAUGCAACGCCCAC (((((((...((((.......................(((((.....)))))..((((((.....))))))..................)))).))))))).............. (-22.42 = -22.82 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:38:39 2011