Locus 11218

Sequence ID dm3.chr3R
Location 19,463,388 – 19,463,478
Length 90
Max. P 0.984594
window15415

overview

Window 5

Location 19,463,388 – 19,463,478
Length 90
Sequences 5
Columns 90
Reading direction reverse
Mean pairwise identity 81.34
Shannon entropy 0.31233
G+C content 0.56382
Mean single sequence MFE -24.64
Consensus MFE -15.50
Energy contribution -16.54
Covariance contribution 1.04
Combinations/Pair 1.24
Mean z-score -2.88
Structure conservation index 0.63
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.17
SVM RNA-class probability 0.984594
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 19463388 90 - 27905053
GAUUUGGAGCUUGACGUAAACGCUUCCAUUGAAGCCCCAUCAACAGGCCCAGCCCCAAGCCUGAAGCUCCAAGCUCCAAGCCAACUCGGC
...((((((((((..((....(((((....)))))........(((((..........)))))..))..))))))))))(((.....))) ( -32.00, z-score =  -4.06, R)
>droAna3.scaffold_13340 3631531 77 + 23697760
GAUUUGGCGCUCGACGUUAACUGUUCCAUUGGUGCCCCAUCAACACUCCCAGCCUC------------CCAGUUUCCAAGAC-CCUCCUC
(((..((((((.((((.....)))).....))))))..)))...............------------..............-....... ( -10.00, z-score =   0.67, R)
>droEre2.scaffold_4820 1887157 82 + 10470090
GAUUUGGAGCUUGACGUAAACGCUUCCAUUGAAGCCCCAUCAACAGACCCAGCCCCAAGCC-------CCAAGCUCCAAGCC-ACUUGGC
...((((((((((........(((((....)))))................((.....)).-------.))))))))))(((-....))) ( -24.60, z-score =  -3.87, R)
>droSec1.super_0 19820699 75 - 21120651
GAUUUGGAGCUUGACGUAAACGCUUUCAUUGAAGCCCCAUCAACAGGCCCAGCC--------------CCAAGCUCCAAGCC-ACUCGGC
...((((((((((........(((((....)))))..........(((...)))--------------.))))))))))(((-....))) ( -24.60, z-score =  -3.11, R)
>droSim1.chr3R 19292742 89 - 27517382
GAUUUGGAGCUUGACGUAAACGCUUCCAUUGAAGCCCCAUCAACAGGCCCAGCCCCAAGCCUGAAGCUCCAAGCUCCAAGCC-ACUCGGC
...((((((((((..((....(((((....)))))........(((((..........)))))..))..))))))))))(((-....))) ( -32.00, z-score =  -4.02, R)
>consensus
GAUUUGGAGCUUGACGUAAACGCUUCCAUUGAAGCCCCAUCAACAGGCCCAGCCCCAAGCC_______CCAAGCUCCAAGCC_ACUCGGC
...((((((((((........(((((....)))))..........(((...)))...............))))))))))(((.....))) (-15.50 = -16.54 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:38:38 2011