| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,459,254 – 19,459,339 |
| Length | 85 |
| Max. P | 0.902484 |
| Location | 19,459,254 – 19,459,339 |
|---|---|
| Length | 85 |
| Sequences | 6 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 78.47 |
| Shannon entropy | 0.39928 |
| G+C content | 0.47117 |
| Mean single sequence MFE | -28.07 |
| Consensus MFE | -18.52 |
| Energy contribution | -17.87 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.16 |
| SVM RNA-class probability | 0.902484 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19459254 85 - 27905053 CUGGGGAAAAUCGUUUUUUCCCAGGGCUAAAAAACUCCCCAUGGCCA----GCCUGGCACAGA--AUCUAAAAUGCAUUUUUGCCAGCAUU ((((((((((....))))))))))(((((............))))).----((.(((((.(((--(((......).))))))))))))... ( -28.90, z-score = -2.43, R) >droEre2.scaffold_4820 1882876 85 + 10470090 CUGGGGAAAAUCGUUUUUUCCCAGGGCUGGAAAACUCCCUGUGGACA----GCCUGGCACAGA--AUCUAAAAUGCAUUUCUGCCAGCAUU ((((((((((....))))))))))(((((....((.....))...))----)))(((((..((--(((......).)))).)))))..... ( -28.70, z-score = -1.86, R) >droYak2.chr3R 20354122 85 - 28832112 CUGGGGAAAAUCGCUUUUUCCCAGGGCUGGAAAACUCCCUGUGGACA----GCCUGGCACAGA--AUCUAAAAUGCAUUUUUGCUAGCAUU ((((((((((....))))))))))(((((....((.....))...))----)))(((((.(((--(((......).))))))))))..... ( -27.00, z-score = -1.48, R) >droSec1.super_0 19816506 85 - 21120651 CUGGGGAAAAUCGUUUUUUCCCAGGGCUGGAAAACUCCCCAUGGACA----GCCUGGCACAGA--AUCUAGAAUGCAUUUUUGCCAGCAUU ((((((((((....))))))))))(((((......(((....)))))----)))(((((.(((--(((......).))))))))))..... ( -28.70, z-score = -1.75, R) >droSim1.chr3R 19288526 85 - 27517382 CUGGGGAAAAUCGUUUUUUCCCAGGGCUGGAAAACUCCCCAUGGACA----GCCUGGCACAGA--AUCUAGAAUGCAUUUUUGCCAGCAUU ((((((((((....))))))))))(((((......(((....)))))----)))(((((.(((--(((......).))))))))))..... ( -28.70, z-score = -1.75, R) >droPer1.super_7 3047313 91 + 4445127 CAGGAGAUAAAUGUUUGCCGAGAGAGGGAUCUCACACACAUGGAACAUCAGGGAUUGCAUGGAUUUUCUCCAUUGCUCUUCCGUUUCCAUU ..((((((..((((.((..((((......)))).)).)))).........((((..(((((((.....)))).)))..))))))))))... ( -26.40, z-score = -1.28, R) >consensus CUGGGGAAAAUCGUUUUUUCCCAGGGCUGGAAAACUCCCCAUGGACA____GCCUGGCACAGA__AUCUAAAAUGCAUUUUUGCCAGCAUU ((((((((((....)))))))))).(((((........(((.((........)))))..((((....(......)....)))))))))... (-18.52 = -17.87 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:38:37 2011