| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,451,331 – 19,451,431 |
| Length | 100 |
| Max. P | 0.977429 |
| Location | 19,451,331 – 19,451,431 |
|---|---|
| Length | 100 |
| Sequences | 11 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 76.78 |
| Shannon entropy | 0.47626 |
| G+C content | 0.50721 |
| Mean single sequence MFE | -33.21 |
| Consensus MFE | -16.98 |
| Energy contribution | -17.20 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.41 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.97 |
| SVM RNA-class probability | 0.977429 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19451331 100 - 27905053 --GUGGACUAGAAGG-GUCCGCCGCCAUUUUGCUGUGGCUGGCGGAAGUCGAGUAAUAAAACAUCAAAAUGACGCAGCAAGGCGCAAGGGAAACUGUUAAGAC---------- --(((((((.....)-))))))((((...((((((((((((((....))).))).......(((....))).))))))))))))...((....))........---------- ( -36.40, z-score = -3.29, R) >droPer1.super_7 3039119 97 + 4445127 --GAGGAGGUUG----CUGCGGCGCCAUUUUGCUGCGGCCAGCGGAAGUCAAGUAAUAAAACAUCAAAAUGACGCAGCAAGGCGCAAGGGAAACUGUUAAGAC---------- --.((.((.((.----((...(((((...((((((((((..((....))...)).......(((....))).)))))))))))))..)).)).)).)).....---------- ( -29.80, z-score = -1.18, R) >dp4.chr2 2943531 97 - 30794189 --GAGGAGGUUG----CUGCGGCGCCAUUUUGCUGCGGCCGGCGGAAGUCAAGUAAUAAAACAUCAAAAUGACGCAGCAAGGCGCAAGGGAAACUGUUAAGAC---------- --.((.((.((.----((...(((((...((((((((...(((....)))...........(((....))).)))))))))))))..)).)).)).)).....---------- ( -33.20, z-score = -2.10, R) >droAna3.scaffold_13340 3615124 103 + 23697760 GAGUGUUCCUAGGGGUGUCGUCCGCCAUUUUUCUGUGGCUGGCGGAAGUCGAGUAAUAAAACAUCAAAAUGACGCAGCAAGGCGCAAGGGAAACUGUUAAGAC---------- ...(((.(((.(..(((((((..(((((......)))))((((....)))).................)))))))..).))).))).((....))........---------- ( -29.80, z-score = -0.98, R) >droEre2.scaffold_4820 1874986 100 + 10470090 --GUGGACUUAAAGG-GUCCGCCGCCAUUUUGCUGUGGCUGGCGGAAGUCGAGUAAUAAAACAUCAAAAUGACGCAGCAAGGCGCAAGGGAAACUGUUAAGAC---------- --(((((((.....)-))))))((((...((((((((((((((....))).))).......(((....))).))))))))))))...((....))........---------- ( -36.40, z-score = -3.35, R) >droYak2.chr3R 20345413 100 - 28832112 --GUGGACUUUAAGG-GUCCGCCGCCAUUUUGCUGCGGCUGGCGGAAGUCGAGUAAUAAAACAUCAAAAUGACGCAGCAAGGCGCAAGGGAAACUGUUAAGAC---------- --(((((((.....)-))))))((((...((((((((((((((....))).))).......(((....))).))))))))))))...((....))........---------- ( -38.30, z-score = -3.59, R) >droSec1.super_0 19808831 100 - 21120651 --GUGGACUUUAAGG-GUCCGCCGCCAUUUUGCUGCGGCUGGCGGAAGUCGAGUAAUAAAACAUCAAAAAGACGCAGCAAGGCGCAAGGGAAACUGUUAAGAC---------- --(((((((.....)-))))))((((...((((((((.(((((....)))((((......)).))....)).))))))))))))...((....))........---------- ( -37.50, z-score = -3.43, R) >droSim1.chr3R 19280808 100 - 27517382 --GUGGACUUUAAGG-GUCCGCCGCCAUUUUGCUGCGGCUGGCGGAAGUCGAGUAAUAAAACAUCAAAAUGACGCAGCAAGGCGCAAGGGAAACUGUUAAGAC---------- --(((((((.....)-))))))((((...((((((((((((((....))).))).......(((....))).))))))))))))...((....))........---------- ( -38.30, z-score = -3.59, R) >droGri2.scaffold_14906 9975735 99 + 14172833 ---GGGGCUGUGCAGGGUGCGCCGACAUUUUCCUGCUGCUGACGGAAGUCCAGUAAUAAAACAUUAGAAUGACGU-GCAAAACGCAGAACACGCUUCCAGGAC---------- ---((((((((((((((.............))))))(((((((....)).)))))..............((.(((-.....)))))..))).)))))......---------- ( -25.52, z-score = 0.52, R) >droMoj3.scaffold_6540 2550091 97 + 34148556 ----------------GCACGGCAGCUUUAUGCUGCGGCUGGCGGAAGUCAAGUAAUAAAACAUAAAAGUGACGCAGCAAAACGUAAGACACGCUGCCAAGACAGGCAGCAAG ----------------....((((((....(((((((((((((....))).))).......(((....))).)))))))...(....)....))))))............... ( -33.80, z-score = -3.02, R) >droVir3.scaffold_13047 9052362 91 - 19223366 -------------------CGCCAGUUUUAUGCUGCGGCUGGCGGAAGUCAUGUAAUAAAACACAAAAAUGACGCAGCUAAACACAAGACAUGCUGCCAAGACAGGCAAG--- -------------------.(((.((((...((((((..((((....))))(((......))).........)))))).))))........((((....)).)))))...--- ( -26.30, z-score = -1.88, R) >consensus __GUGGACUUUAAGG_GUCCGCCGCCAUUUUGCUGCGGCUGGCGGAAGUCGAGUAAUAAAACAUCAAAAUGACGCAGCAAGGCGCAAGGGAAACUGUUAAGAC__________ ........................((.((((((((((((((((....)))).)).......(((....))).))))))))))(....)))....................... (-16.98 = -17.20 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:38:36 2011