| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,450,553 – 19,450,613 |
| Length | 60 |
| Max. P | 0.794574 |
| Location | 19,450,553 – 19,450,613 |
|---|---|
| Length | 60 |
| Sequences | 6 |
| Columns | 60 |
| Reading direction | reverse |
| Mean pairwise identity | 77.78 |
| Shannon entropy | 0.42886 |
| G+C content | 0.31389 |
| Mean single sequence MFE | -8.42 |
| Consensus MFE | -6.49 |
| Energy contribution | -6.72 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.05 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.794574 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19450553 60 - 27905053 UUUCUUAACCCUUUUAAUUAAAGUUGCUGUAGCUGACAGAGAUUUUAAUUCGUUUCUUCU ...............(((((((((..((((.....))))..))))))))).......... ( -9.50, z-score = -1.48, R) >droSim1.chr3R 19280041 60 - 27517382 UUUCUUAACCCUUUUAAUUAAAGUUGCUGUAGCUGACAGAGAUUUUAAUUCGUUUCUUUU ...............(((((((((..((((.....))))..))))))))).......... ( -9.50, z-score = -1.62, R) >droSec1.super_0 19808063 60 - 21120651 UUUCUUAACCCUUUUAAUUAAAGUUGCUGUAGCUGACAGAGAUUUUAAUUCGUUUCUUUU ...............(((((((((..((((.....))))..))))))))).......... ( -9.50, z-score = -1.62, R) >droYak2.chr3R 20344607 60 - 28832112 UUUCUUAACCCUUUUAAUUAAAGUUGCUGUUGCUGACGGAGAUUUUAAUCCACUUGUUUU ................((((((((..(((((...)))))..))))))))........... ( -8.10, z-score = -0.94, R) >droEre2.scaffold_4820 1874228 60 + 10470090 UUUCUUAACCCUUUUAAUUAAAAUUGCUGUAGCUGACAGAGAUUUUAAUCCUCUUGUUUU ................((((((((..((((.....))))..))))))))........... ( -8.70, z-score = -1.85, R) >droVir3.scaffold_12855 9129027 60 - 10161210 UUUCUUAGCCAAGUGUCAGGAAGUGACCCGUAGCAACAUAAGUUUCCAUCUGCAGUUUAU .......((...(.((((.....)))).)...)).......................... ( -5.20, z-score = 1.20, R) >consensus UUUCUUAACCCUUUUAAUUAAAGUUGCUGUAGCUGACAGAGAUUUUAAUCCGCUUCUUUU ................(((((((((.((((.....)))).)))))))))........... ( -6.49 = -6.72 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:38:35 2011