| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,448,509 – 19,448,573 |
| Length | 64 |
| Max. P | 0.918196 |
| Location | 19,448,509 – 19,448,573 |
|---|---|
| Length | 64 |
| Sequences | 9 |
| Columns | 68 |
| Reading direction | reverse |
| Mean pairwise identity | 80.37 |
| Shannon entropy | 0.40045 |
| G+C content | 0.55763 |
| Mean single sequence MFE | -21.41 |
| Consensus MFE | -12.20 |
| Energy contribution | -12.06 |
| Covariance contribution | -0.15 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.26 |
| SVM RNA-class probability | 0.918196 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19448509 64 - 27905053 GCAGU--GGGGCACUUGGCAGUUGCAAUUAGCAACGAGAGCCACCCGG--ACCAUUGUCAAGAGCACC (((((--((..(...((((.(((((.....)))))....))))...).--.))))))).......... ( -20.90, z-score = -1.45, R) >droSim1.chr3R 19278004 64 - 27517382 GCAGU--GGGGCACUUGGCAGUUGCAAUUAGCAACGAGAGCCACCCGG--ACCAUUGUCAAGAGCACC (((((--((..(...((((.(((((.....)))))....))))...).--.))))))).......... ( -20.90, z-score = -1.45, R) >droSec1.super_0 19806071 64 - 21120651 GCAGU--GGGGCACUUGGCAGUUGCAAUUAGCAACGAGAGCCACCCGG--ACCAUUGUCAAGAGCACC (((((--((..(...((((.(((((.....)))))....))))...).--.))))))).......... ( -20.90, z-score = -1.45, R) >droYak2.chr3R 20342383 64 - 28832112 GCACU--GGGCCACUUGGCAGUUGCAAUUAGCAACGAGAGCCAUCCGC--ACCAUUGUCAAGAGCACC (((.(--((((....((((.(((((.....)))))....))))...))--.))).))).......... ( -19.20, z-score = -1.33, R) >droEre2.scaffold_4820 1872288 66 + 10470090 GCAGU--GGGGCACUUGGCAGUUGCAAUUAGCAACGAGAGCCACCCGGAGACCAUUGUCAAGAGCAGC (((((--((((....((((.(((((.....)))))....)))))))(....))))))).......... ( -21.50, z-score = -1.56, R) >droAna3.scaffold_13340 3612340 68 + 23697760 CCAGUCCCGGGCACUUGGCAGUUGCAAUUAGCAACGAGAGCCACCCUCUGGCCAUUGUCAAGUGCUCC ........(((((((((((((((((.....)))))..(.((((.....)))))..)))))))))))). ( -30.70, z-score = -4.19, R) >dp4.chr2 2940856 56 - 30794189 ---------GCCACUUGGCAGUUGCAAUUAGCAACAAGAGC---CCGAAGACCAUUGUUGAGUGUGCC ---------((((((..((((((((.....)))))......---..(.....)..)))..)))).)). ( -17.80, z-score = -2.69, R) >droPer1.super_7 3036435 63 + 4445127 --AGAUCCUGCCACUUGGCAGUUGCAAUUAGCAACAAGAGC---CCGAAGACCAUUGUCGAGUGUGCC --.......((((((((((((((((.....)))))......---..(.....)..))))))))).)). ( -19.10, z-score = -2.50, R) >droWil1.scaffold_181130 5495790 62 - 16660200 -CAA---GGACCACUUGGCAGUUGCAAUUAGCAGCAGGAG--AGCUUCAGACCAUUGUCAAGUGUGCC -...---((..((((((((((((((.....))))).(((.--...))).......)))))))))..)) ( -21.70, z-score = -2.45, R) >consensus GCAGU__GGGGCACUUGGCAGUUGCAAUUAGCAACGAGAGCCACCCGG_GACCAUUGUCAAGAGCACC .............((((((((((((.....)))))...........(.....)..)))))))...... (-12.20 = -12.06 + -0.15)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:38:34 2011