| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,441,615 – 19,441,708 |
| Length | 93 |
| Max. P | 0.711420 |
| Location | 19,441,615 – 19,441,708 |
|---|---|
| Length | 93 |
| Sequences | 10 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 78.75 |
| Shannon entropy | 0.44869 |
| G+C content | 0.34185 |
| Mean single sequence MFE | -21.88 |
| Consensus MFE | -10.59 |
| Energy contribution | -11.10 |
| Covariance contribution | 0.51 |
| Combinations/Pair | 1.53 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.711420 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19441615 93 + 27905053 -------AGCCACUGUUAAAAGUUUAUUAUUAAUAAAUUAUGAGUUUAAUGAAUGCGCU--GGAAAAACUUCGCUAU-GAAAAUAGUUUCGCAGUGGCACCUC -------.((((((((.(((.((((((((.................))))))))(((..--(......)..)))...-........))).))))))))..... ( -21.73, z-score = -2.26, R) >droSim1.chr3R 19271179 93 + 27517382 -------AGCCGCUGUUAAAAGUUUAUUAUUAAUAAAUUAUGAGUUUAAUGAAUGCGCU--GGAAAAACUUUGCUAU-GAAAAUAGUUUCGCAGUGGCACCUC -------.((((((((..(((((((.((....((..((((......))))..)).....--.)).)))))))(((((-....)))))...))))))))..... ( -22.30, z-score = -2.13, R) >droSec1.super_0 19799192 93 + 21120651 -------AGCCGCUGUUAAAAGUUUAUUAUUAAUAAAUUAUGAGUUUAAUGAAUGAGCU--GGAAAAACUUUGCUAU-GAAAAUAGUUUCGCAGUGGCACCUC -------.((((((((....(((((((((((((............)))))).)))))))--...........(((((-....)))))...))))))))..... ( -24.80, z-score = -3.37, R) >droYak2.chr3R 20335363 93 + 28832112 -------AGCCGCUGUUAAAAGUUUAUUAUUAAUAAAUUAUGAGUUUAAUGAAUGCGCU--GGAAAAACUUUGCUAU-GAAAAUAGUUUCGCAGUGGCACCUC -------.((((((((..(((((((.((....((..((((......))))..)).....--.)).)))))))(((((-....)))))...))))))))..... ( -22.30, z-score = -2.13, R) >droEre2.scaffold_4820 1865749 93 - 10470090 -------AGCCGCUGUUAAAAGUUUAUUAUUAAUAAAUUAUGAGUUUAAUGAAUGCGCU--GGAAAAACUUUGCUAU-GAAAAUAGUUUCGCAGUGGCACCUC -------.((((((((..(((((((.((....((..((((......))))..)).....--.)).)))))))(((((-....)))))...))))))))..... ( -22.30, z-score = -2.13, R) >droAna3.scaffold_13340 3605301 98 - 23697760 --GGCCCUAGCGCUGUUAAAAGUUUAUUAUUAAUAAAUUAUGAGUUUAAUGAAUGCGCU--GGAAAAAGUUUGCAAU-GAAAAUAGUUUCAGAGCGGCACCUC --.((((((((((.(((((((((((((.....))))))).....))))))....)))))--)).........((..(-((((....)))))..)))))..... ( -24.00, z-score = -1.81, R) >dp4.chr2 2933891 93 + 30794189 -------UGCUGCUGUUAAAAGUUUAUUAUUAAUAAAUUAAGACUUUAAUGAAGGCGCU--GGUAAAACUUUCAAAU-GGAAAUAGUUUCGCAGCGGCACCUC -------(((((((((..(((((((...(((....)))..)))))))..((((((....--.......))))))...-............))))))))).... ( -20.00, z-score = -1.13, R) >droPer1.super_7 3029388 93 - 4445127 -------UGCUGCUGUUAAAAGUUUAUUAUUAAUAAAUUAAGACUUUAAUGAAGGCGCU--GGUAAAACUUUGAAAU-GGAAAUAGUUUCGCAGCGGCACCUC -------(((((((((..(((((((.(((((((............)))))))..((...--.)).)))))))(((((-.......)))))))))))))).... ( -21.50, z-score = -1.61, R) >droWil1.scaffold_181130 5489022 103 + 16660200 UGUUGCUCAUAACUGCAUAAAGUUUCUUAUUAAUAAAUUGUAACUUUAAUGAAUGUGCAAGGGAAAAACUUUCAAAUUGAAAAUAGUUUCCUGCCAGCACCUC ...(((........)))(((((((....(((....)))...)))))))......((((..((((((...((((.....))))....))))))....))))... ( -18.20, z-score = -1.00, R) >droMoj3.scaffold_6540 2539670 91 - 34148556 ----GUGCGCGGCAGC-AAAAGUUUAUUAUUAAUAAAUUAGAGCUGUAGUAAAGUUUCAAAUGAAAAUAGUUUCGCC------UGCCACCUUGGCGGCUCUC- ----.(((...(((((-...(((((((.....)))))))...))))).)))...((((....))))........(((------.(((.....))))))....- ( -21.70, z-score = -0.81, R) >consensus _______AGCCGCUGUUAAAAGUUUAUUAUUAAUAAAUUAUGAGUUUAAUGAAUGCGCU__GGAAAAACUUUGCUAU_GAAAAUAGUUUCGCAGCGGCACCUC ........((((((((..........(((((((............)))))))..........................((((....))))))))))))..... (-10.59 = -11.10 + 0.51)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:38:31 2011