Locus 1121

Sequence ID dm3.chr2L
Location 8,425,865 – 8,425,957
Length 92
Max. P 0.927174
window1534

overview

Window 4

Location 8,425,865 – 8,425,957
Length 92
Sequences 4
Columns 96
Reading direction reverse
Mean pairwise identity 79.50
Shannon entropy 0.32654
G+C content 0.56333
Mean single sequence MFE -14.80
Consensus MFE -14.30
Energy contribution -13.92
Covariance contribution -0.38
Combinations/Pair 1.12
Mean z-score -1.18
Structure conservation index 0.97
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.33
SVM RNA-class probability 0.927174
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 8425865 92 - 23011544
ACAUCCGAACCAUCCACA----UGCCCGCCCCACCAUCCAAUUCCACUUCCACUUUUAACAGAAGCACACGCACCACCGGCACGUGGUGCGCCAUA
..................----........................((((...........))))....((((((((......))))))))..... ( -14.80, z-score =  -1.10, R)
>droSim1.chr2L 8212059 75 - 22036055
---------------------ACAUCCGACCCAUCAUCCAAUUCCACUUCCACUUUUAACAGAAGCACACGCACCACCGGCACGUGGUGCGCCAUA
---------------------.........................((((...........))))....((((((((......))))))))..... ( -14.80, z-score =  -2.39, R)
>droSec1.super_3 3922179 96 - 7220098
ACAUCCGACCCAUCCACAUGCCUGCCCGCCCCAUCGUCCAAUUCCACUUCCACUUUUAACAGAAGCACACGCACCACCGGCACGUGGUGCGCCAUA
......(.(.((.((((.((((((..((......))..))........................((....))......)))).)))))).).)... ( -15.00, z-score =   0.02, R)
>droYak2.chr2L 11063854 84 - 22324452
ACAUCCGACCCAU------------CCGCUCCACCAUCCAAUUCCACUUCCACUUUUAACAGACACACACGCUCCACCGGCACGUGGGGCGCCAUA
.............------------.((((((((..................((......))........(((.....)))..))))))))..... ( -14.60, z-score =  -1.24, R)
>consensus
ACAUCCGACCCAU_________UGCCCGCCCCACCAUCCAAUUCCACUUCCACUUUUAACAGAAGCACACGCACCACCGGCACGUGGUGCGCCAUA
.....................................................................((((((((......))))))))..... (-14.30 = -13.92 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:26:01 2011