| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,411,316 – 19,411,407 |
| Length | 91 |
| Max. P | 0.846014 |
| Location | 19,411,316 – 19,411,407 |
|---|---|
| Length | 91 |
| Sequences | 11 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 68.36 |
| Shannon entropy | 0.62620 |
| G+C content | 0.35436 |
| Mean single sequence MFE | -15.14 |
| Consensus MFE | -7.17 |
| Energy contribution | -6.99 |
| Covariance contribution | -0.18 |
| Combinations/Pair | 1.53 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.89 |
| SVM RNA-class probability | 0.846014 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19411316 91 - 27905053 -------------CAAAGAACUUUUGUGUACAUUUGUGUUUAUUAUUGUAUAAAUCAAAAGAUAAAGUUGCACACAGAGUUCCUGUUCCGCCCUCCGCCGUCUG-------- -------------....(((((((((((((..(((((.(((...(((.....)))..))).)))))..)))))).)))))))......................-------- ( -15.80, z-score = -1.49, R) >droSim1.chr3R_random 956350 91 - 1307089 -------------CAAAGAACUUUUGUGCACAUUUGUGUUUAUUAUUGUAUAAAUCAAAAGAUAAAGUUGCACACAGAGUUCCUGUUCCGCCCUCCGCCGUCUC-------- -------------....(((((((((((((..(((((.(((...(((.....)))..))).)))))..)))))).)))))))......................-------- ( -17.80, z-score = -2.03, R) >droSec1.super_0 19770352 91 - 21120651 -------------CAAAGAACUUUUGUGCACAUUUGUGUUUAUUAUUGUAUAAAUCAAAAGAUAAAGUUGCACACAGAGUUCCUGUCCCGCCCUCCGCCGUCUC-------- -------------....(((((((((((((..(((((.(((...(((.....)))..))).)))))..)))))).)))))))......................-------- ( -17.80, z-score = -2.20, R) >droYak2.chr3R 20298174 96 - 28832112 -------------CAAAGAACUUUUGUGCACAUUUGUGUUUAUUAUUGUAUAAAUCAAAAGAUAAAGUUGCACACAGAGUUCCUGUUCCGCUUUCCCUUCUCCCUGCUC--- -------------....(((((((((((((..(((((.(((...(((.....)))..))).)))))..)))))).))))))).......((..............))..--- ( -17.84, z-score = -1.91, R) >droEre2.scaffold_4820 1837333 99 + 10470090 -------------CAAAGAACUUUUGUGCACAUUUGUGUUUAUUAUUGUAUAAAUCAAAAGAUAAAGUUGCACACAGAGUUCCUGCUCCGCCCUCCGCCCUCCCCCUCCCCC -------------....(((((((((((((..(((((.(((...(((.....)))..))).)))))..)))))).))))))).............................. ( -17.80, z-score = -3.00, R) >droAna3.scaffold_13340 3561021 92 + 23697760 -------------CGAAGAACUUUUGUGCACAUUUGUGUUUAUUAUUGUAUAAAUCAAAAGAUAAAGUUGCUCACACA-UACACACACUUCCUGGUCCUCUCUUGG------ -------------.((((..((((((.((((....))))((((......))))..)))))).....((((......))-.)).....))))...............------ ( -9.10, z-score = 1.87, R) >dp4.chr2 2898816 73 - 30794189 -------------CAAAGAACUUUUGUGCACAUUUCUGUUUAUUAUUGUAUAAAUCAAAAGAUAAAGUUGCACACAAAGUUCCUGC-------------------------- -------------....(((((((((((((....(((((((((......))))))....)))......)))))).)))))))....-------------------------- ( -16.10, z-score = -2.45, R) >droPer1.super_7 2992345 73 + 4445127 -------------CAAAGAACUUUUGUGCACAUUUCUGUUUAUUAUUGUAUAAAUCAAAAGAUAAAGUUGCACACAAAGUUCCUGC-------------------------- -------------....(((((((((((((....(((((((((......))))))....)))......)))))).)))))))....-------------------------- ( -16.10, z-score = -2.45, R) >droWil1.scaffold_181130 5466727 96 - 16660200 -------------CCAAAAACUC---UGAAUAUUUCUGUUUAUUAUUGUCUGAAUCAAAAGAUAAAGUUGCACAUAUACACAAAGUUAUUUCCACUUUACUAUAUUCUCUUG -------------..........---.((((((...(((..(((.((((((........))))))))).))).........(((((.......)))))...))))))..... ( -8.70, z-score = 0.17, R) >droVir3.scaffold_13047 9025686 91 - 19223366 CGCUGGACGUUGCAAAAGGACUUUUAUGCAUAUGUAUGUUUAUUAUUGUAUAAAUCUGGGAAUAAGCUUGCAUAUAAAGUUGUUAGUGCUC--------------------- ...........(((.((.((((((((((((...((.(((((...(((.....)))....))))).)).)))))).)))))).))..)))..--------------------- ( -17.60, z-score = -0.01, R) >droMoj3.scaffold_6540 2522046 81 + 34148556 ----------CGCUAGAGGACUUUUCUGCACAUUUAUGCUUAUUAUUGUAUAAAUCAAGGCAUAAGCUUGUAUAUAAACUUUUUACACGUA--------------------- ----------...((.(((.(((...(((..((((((((........))))))))....))).)))))).))...................--------------------- ( -11.90, z-score = -0.06, R) >consensus _____________CAAAGAACUUUUGUGCACAUUUGUGUUUAUUAUUGUAUAAAUCAAAAGAUAAAGUUGCACACAGAGUUCCUGCUCCGCCCUCC_C__UCU_________ ........................((((((..(((((.(((...(((.....)))..))).)))))..))))))...................................... ( -7.17 = -6.99 + -0.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:38:30 2011