| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,388,226 – 19,388,336 |
| Length | 110 |
| Max. P | 0.975437 |
| Location | 19,388,226 – 19,388,336 |
|---|---|
| Length | 110 |
| Sequences | 4 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 87.27 |
| Shannon entropy | 0.21054 |
| G+C content | 0.39241 |
| Mean single sequence MFE | -27.36 |
| Consensus MFE | -22.41 |
| Energy contribution | -22.85 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.51 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.93 |
| SVM RNA-class probability | 0.975437 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19388226 110 - 27905053 UAUUUCUUCUAUUUACUUCUUAUGAUAUUUGGUAAAAUAUAGAAAUACUCUCGCAGUGCACGUAUUACCCGCGAACUGGUAGUGCCUGCAUUGCCAAGGCAACUUUGUGG (((((((....((((((.............))))))....))))))).....((((((((.((((((((........)))))))).)))))))).(((....)))..... ( -31.92, z-score = -3.50, R) >droSim1.chr3R 19210106 110 - 27517382 UAUUUCUUCUAUUUACUUCUUAUGAUAUUUAGUUAAAUAUACAAAUACUCUCGCAGUGCACGUAUUACCCGCCAACUGGUAGUGCCUGCAUUGCCAAGGCAACUUUGUGG (((((...(((..((..((....))))..)))..)))))((((((.......((((((((.((((((((........)))))))).))))))))...(....))))))). ( -27.70, z-score = -2.98, R) >droSec1.super_0 19747379 110 - 21120651 UAUUUCUUCUAUUUACUUCUUAUGAUAUUUACUUAAAUAUACAAAUACUCUCGCAGUGCACGUAUUACCCGCCAACUGGUAGUGCCUGCAUUGCCAAGGCAACUUUGUGG ......................((((((((....)))))).))..(((....((((((((.((((((((........)))))))).)))))))).(((....))).))). ( -26.70, z-score = -3.20, R) >droEre2.scaffold_4820 1814324 106 + 10470090 ----UAUGCUUUAUACUGCUUAUUAUAUUUUAUGACUUAUACAUAUAUUCUUGCAGUGCACGUGCUCUCCGCCAACUGGUAGUGCCUGCUUCGCCAAGGCAACUUUGUGG ----..........(((((....(((((..((.....))...))))).....)))))(((.(..((....(((....)))))..).)))..(((.(((....))).))). ( -23.10, z-score = -0.35, R) >consensus UAUUUCUUCUAUUUACUUCUUAUGAUAUUUAGUUAAAUAUACAAAUACUCUCGCAGUGCACGUAUUACCCGCCAACUGGUAGUGCCUGCAUUGCCAAGGCAACUUUGUGG .......................................((((.........((((((((.((((((((........)))))))).)))))))).(((....))))))). (-22.41 = -22.85 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:38:25 2011