| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,377,265 – 19,377,370 |
| Length | 105 |
| Max. P | 0.981940 |
| Location | 19,377,265 – 19,377,370 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 90.30 |
| Shannon entropy | 0.13357 |
| G+C content | 0.30750 |
| Mean single sequence MFE | -25.37 |
| Consensus MFE | -23.27 |
| Energy contribution | -23.17 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.41 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.09 |
| SVM RNA-class probability | 0.981940 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19377265 105 - 27905053 GGUUUGGUUAGACUUGGAAACAAGUUAAGAUUUAAAUGGGUCAAAUGGACUGUUAAUCUAAGUCUUACACUAUUAUAGACUACCAGCAUAAAUACUUUAAUUUAA----- ((((((..((((((((....)))))(((((((((.((.((((.....))))....)).)))))))))..)))...))))))........................----- ( -22.40, z-score = -1.87, R) >droSim1.chr3R 19200011 110 - 27517382 GGUUUGGUUAGACUUGGAAACAAGUUAAGAUUUAAAUGGGUCAAAUAGACUGUUUAUCUAGGUCUUACACUAUUAUAGACUACCAGCUUAAAUAUCUCAAGCAAAUUUAA .((((((...((((((....))))))...((((((.((((((.....))).((((((.(((........)))..))))))..)))..))))))...))))))........ ( -25.90, z-score = -2.42, R) >droSec1.super_0 19738060 110 - 21120651 GGUUUGGUUAGACUUGGAAACAAGUUAAGAUUUAAAUGGGUCAAAUAGACUGUUUAUCUAGGUCUUACACUAUUAUAGACCACCAGCUUAAAUAUCUCAAGCAAAUUUAA .((((((...((((((....))))))...((((((.((((((.....)))..........(((((...........))))).)))..))))))...))))))........ ( -27.80, z-score = -2.95, R) >consensus GGUUUGGUUAGACUUGGAAACAAGUUAAGAUUUAAAUGGGUCAAAUAGACUGUUUAUCUAGGUCUUACACUAUUAUAGACUACCAGCUUAAAUAUCUCAAGCAAAUUUAA ((((((..((((((((....)))))(((((((((.(((((((.....))))...))).)))))))))..)))...))))))............................. (-23.27 = -23.17 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:38:24 2011