| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,370,690 – 19,370,782 |
| Length | 92 |
| Max. P | 0.547360 |
| Location | 19,370,690 – 19,370,782 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 80.85 |
| Shannon entropy | 0.35364 |
| G+C content | 0.37077 |
| Mean single sequence MFE | -20.79 |
| Consensus MFE | -13.65 |
| Energy contribution | -13.90 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.547360 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19370690 92 + 27905053 CCAUUGGUUGAGUAUAAACGCUCUAGAUUGAAUAGUUUCGGCCA-----ACUUUGGUCGUGAUUAAUUCAGUGAAGUCCUUACAUUUGUCAUUCAGU ..(((((..((((......))))..((((((((((((.((((((-----....)))))).)))).)))))((((.....))))....)))..))))) ( -19.60, z-score = -0.91, R) >droAna3.scaffold_13340 3522222 90 - 23697760 UCUUUGACAGAGCACAAGAGUUGGUAAUUGAAUAGUUAUGGCCGCUUUUGCUUUAGUCUUAAUAAACUCAAUUAAGUUGUUCUGUUUAGU------- .((..((((((((((((((((.(((...(((....)))..)))))))))).......((((((.......)))))).))))))))).)).------- ( -21.50, z-score = -1.68, R) >droEre2.scaffold_4820 1798298 92 - 10470090 CCAUUGGUUGAGCAUAAGCGCUCUAGAUUGAAUAGUUUCGGCCA-----ACUUUGGUCGUGAUUAAUUCAAUGAAGUUCUUCCAUUUGUCAUUUAGU ....(((..((((......))))...(((((((((((.((((((-----....)))))).)))).))))))).........)))............. ( -22.30, z-score = -1.76, R) >droYak2.chr3R 20256981 92 + 28832112 CCAUUGGUUGAAUAUAAACGCUUUAGAUUGAAUAGUUUCGGCCA-----ACUUUAGCCGUGAUUAAUUCAAUGAAGUCCUUCCAUUUGUCAUUUAGU ..(((((.(((........(((((..(((((((((((.((((..-----......)))).)))).))))))))))))...........))).))))) ( -16.81, z-score = -0.99, R) >droSec1.super_0 19731465 92 + 21120651 CCAUUGGUUGAGCAUAAACGCUCUAGAUUGAAUAGUUUCGGCCA-----ACUUUGGUCGUGAGUAAUUCAAUGAAGUCCUUACAUUUGUCAUUCAGU .........((((......))))...(((((((......(((((-----....)))))(((((...(((...)))...))))).......))))))) ( -20.20, z-score = -0.91, R) >droSim1.chr3R 19193523 92 + 27517382 CCAUUGGUUGAGCAUAAACGCUCUAGAUUGAAUAGUUUCGGCCA-----ACUUUGGCCGUGAUUAAUUCAAUGAAGUCCUUACAUUUGUCAUUCAGU ..(((((..((((......))))...(((((((((((.((((((-----....)))))).)))).)))))))....................))))) ( -24.30, z-score = -2.40, R) >consensus CCAUUGGUUGAGCAUAAACGCUCUAGAUUGAAUAGUUUCGGCCA_____ACUUUGGUCGUGAUUAAUUCAAUGAAGUCCUUACAUUUGUCAUUCAGU .........((((......))))...(((((((((((.((((((.........)))))).)))).)))))))......................... (-13.65 = -13.90 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:38:23 2011