| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,344,577 – 19,344,678 |
| Length | 101 |
| Max. P | 0.974791 |
| Location | 19,344,577 – 19,344,678 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 74.09 |
| Shannon entropy | 0.45905 |
| G+C content | 0.29717 |
| Mean single sequence MFE | -23.93 |
| Consensus MFE | -13.34 |
| Energy contribution | -13.52 |
| Covariance contribution | 0.18 |
| Combinations/Pair | 1.48 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.92 |
| SVM RNA-class probability | 0.974791 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19344577 101 - 27905053 ------------AUCUGCUAUUUUUAUGGUUGAAUAAUGUGGUUAAUGUUUGCUUGUUAUUCCAUAAAUAAUAUAAACUGAUAAAGUAUAU-GGUUG-UAUACUUUGCCAGCGGA- ------------.((((((...(((((((...(((((.(..(.......)..))))))...)))))))...........(.((((((((((-....)-))))))))).)))))))- ( -25.60, z-score = -3.02, R) >droYak2.chr3R 20228647 101 - 28832112 ------------AUCUGCUAUUUAUAUGGUUGAAUAAUGUGGUAAAUGUUUGCUUGUUAUUCCAUAAAUAAAAUAAACUGAUAAAGUGUAU-GGCUG-UAUACUUUGCCAGCGGA- ------------.((((((.....(((((...(((((.(..(.......)..))))))...))))).............(.((((((((((-....)-))))))))).)))))))- ( -24.10, z-score = -2.33, R) >droSim1.chr3R 19163408 101 - 27517382 ------------AUCUGCUAUUUUUAUGGUUGAAUAAUGUGGCUAAUGUUUGCUCGUUAUUCCAUAAAUAAAAUAAACUGAUAAAGUAUAU-GGUUG-UAUAUUUUGCCAGCGGA- ------------.((((((...(((((((...(((((((.(((........)))))))))))))))))...........(.((((((((((-....)-))))))))).)))))))- ( -25.50, z-score = -2.91, R) >droSec1.super_0 19706734 102 - 21120651 ------------AUCUGCUAUUUUUAUGGUUGAAUAAUGUGGCUAAUGUUUGCUCGUUAUUCCAUAAAUAAAAUAAACUGAUAAAGUAUAUGGGUUG-UAUAUUUUGCCAGCGGA- ------------.((((((...(((((((...(((((((.(((........)))))))))))))))))...........(.((((((((((.....)-))))))))).)))))))- ( -25.50, z-score = -2.57, R) >droEre2.scaffold_4820 1766430 101 + 10470090 ------------AUUCGCUAUUUAUGCGAUUGAAUAAUGUAGUAAAUAUUUGCGUAUUAUUCCUUACAUAAAAUAAACUGAUAAAGUAUAU-GGUUG-UAUACUUUGCCAGCGGA- ------------.((((((.((((((..(..(((((((...((((....))))..))))))).)..)))))).......(.((((((((((-....)-))))))))).)))))))- ( -24.00, z-score = -2.36, R) >droMoj3.scaffold_6540 2462390 113 + 34148556 AAGUGAAGAACUUAUGACUGUAUAUAUAUUUCGAUAAUUUAUUCGACGAGAUAUCAGUA-UAUAUAUACAUAUGCAAUUGAUAA--CAAACUGGUUGCUCUCGUUAACCUGCUCAU ((((.....)))).(((((((((((((((.((((........)))).((....))...)-))))))))))...((((((.....--......))))))....)))).......... ( -18.90, z-score = -0.07, R) >consensus ____________AUCUGCUAUUUAUAUGGUUGAAUAAUGUGGUUAAUGUUUGCUCGUUAUUCCAUAAAUAAAAUAAACUGAUAAAGUAUAU_GGUUG_UAUACUUUGCCAGCGGA_ .............((((((...(((((((...(((((((.(((........)))))))))))))))))...........(.(((((((((........))))))))).))))))). (-13.34 = -13.52 + 0.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:38:22 2011