| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,423,671 – 8,423,739 |
| Length | 68 |
| Max. P | 0.557289 |
| Location | 8,423,671 – 8,423,739 |
|---|---|
| Length | 68 |
| Sequences | 8 |
| Columns | 71 |
| Reading direction | forward |
| Mean pairwise identity | 60.52 |
| Shannon entropy | 0.80505 |
| G+C content | 0.56958 |
| Mean single sequence MFE | -21.86 |
| Consensus MFE | -6.42 |
| Energy contribution | -6.89 |
| Covariance contribution | 0.47 |
| Combinations/Pair | 1.73 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.29 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.557289 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8423671 68 + 23011544 AACGUCUCAUCCAUCGCUCCCUCGCCGGCAGGCGAGA--AUGAGACGGCCAGAUGGAUAGAUAGCGUUGG- (((((.(((((((((.(((.((((((....)))))).--..))).......))))))).))..)))))..- ( -26.20, z-score = -1.95, R) >droSim1.chr2L 8209959 66 + 22036055 AACGUCUC----AUCGCUCCCUCGCCGGCAGGCGAGAGAAUGAGAUGGCCAGAUGGAUAGAUAGCGUUGG- ..((((((----((...((.((((((....)))))).)))))))))).((....))..............- ( -23.60, z-score = -1.35, R) >droSec1.super_3 3920136 64 + 7220098 AACGUCUC----AUCGCUCCCUCGCCGGCAGGCGAGA--AUGAGAUGGCCAGAUGGAUAGAUAGCGUUGG- (((((.((----(((.(...((((((....)))))).--..).)))))((....)).......)))))..- ( -20.50, z-score = -0.50, R) >droYak2.chr2L 11061633 64 + 22324452 AACGUCUC----AUCGCUCCCUCGCCAGCAGGCGAGA--AUGAGACGGCCAGAUGGAUAGAUAGCGCUGG- ..((((((----((......((((((....)))))).--)))))))).((((.((......))...))))- ( -23.60, z-score = -1.59, R) >droEre2.scaffold_4929 17332501 63 + 26641161 AACGUCUC----AUCGCUCCCUCGCGGGCAGGCGAGA--AUGAGACGGCCAGAUGGAUGGAUAGCGUUG-- ..((((((----(((((((((....)))..)))))..--.))))))).(((......))).........-- ( -23.00, z-score = -1.09, R) >droAna3.scaffold_12916 10079569 62 + 16180835 AAAGUCUC----AUC--UCCAUGCACUGCACACCAAAAAGGGAGACUCUGAGGGGCAUAGAAAG-GCGG-- ...((((.----.((--(..((((........((....(((....).))..)).))))))).))-))..-- ( -10.60, z-score = 1.19, R) >droPer1.super_5 1177530 62 + 6813705 -GCGCAUC-----UCUCUAACUGUACAACGAGGGAGAGUGCGAGAGAGGGAGUGAGUGCAAGAGUAAG--- -((((.((-----(((((...(((((...........)))))..)))))))....)))).........--- ( -18.10, z-score = -1.54, R) >droMoj3.scaffold_6500 25503582 65 - 32352404 --CGUCUG----GCUUCUCUGAUGGCUGCGAUCUUUUAGUGAUGGGAGCCAGCGGCAGAGUGGGGCGAAUU --(((((.----((((..(((.(((((.(.(((.......))).).))))).)))..)))).))))).... ( -29.30, z-score = -3.21, R) >consensus AACGUCUC____AUCGCUCCCUCGCCGGCAGGCGAGA__AUGAGACGGCCAGAUGGAUAGAUAGCGUUGG_ ..((((((............(((((......))))).....))))))........................ ( -6.42 = -6.89 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:26:00 2011