| Sequence ID | dm3.chr2L |
|---|---|
| Location | 782,097 – 782,210 |
| Length | 113 |
| Max. P | 0.891164 |
| Location | 782,097 – 782,210 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 92.63 |
| Shannon entropy | 0.12974 |
| G+C content | 0.40950 |
| Mean single sequence MFE | -24.72 |
| Consensus MFE | -22.58 |
| Energy contribution | -22.86 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.10 |
| SVM RNA-class probability | 0.891164 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 782097 113 + 23011544 AAUACUUCCUUUCUGAAAUCCGAAAGGUACAUCAACUGCAAUGCAUUCGGAACUGCAAGUCGCGCUCUUUCCGACGCUCUGCAGGUAAAAU-AACAUAUUAUCAGUGCUCAAUU ..((((.((((((.(....).))))))........(((((..((..((((((..((.......))...)))))).))..))))).......-...........))))....... ( -26.30, z-score = -2.14, R) >droSim1.chr2L 783567 114 + 22036055 AAUACUUCAUUUCUGAAAUCCGAAAGGUACAUCAACUGCAAUGCAUUCGGAACUGCAAGUCGCGCUCUUUCCGACGCUCUGCAGGUAAAAUUAACAUAUAAUCAGUGCUCAAUU ............((((...((....))........(((((..((..((((((..((.......))...)))))).))..))))).................))))......... ( -25.90, z-score = -2.04, R) >droSec1.super_14 752691 114 + 2068291 AAUACUUCCUUUCUGAAAUCCGAAAGGUACAUCAACUGCAAUGCAUUCGGAACUGCAAGUCGCGCUCUUUCCGACGCUCUGCAGGUAAAAUUAACAUAUAAUCAGUGCUCAAUU ..((((.((((((.(....).))))))........(((((..((..((((((..((.......))...)))))).))..)))))...................))))....... ( -26.30, z-score = -2.19, R) >droYak2.chr2L 764996 114 + 22324452 AAUACUUCCUUUCUGAAAUCCGAAAGGUACAUAAACUGCAACGCAUUCGGAACUGCAAGUCGCGCUCUCUCCGACGCUCUGCAGGUAAAACAAACAUAUUUUCAUUGCUAAAUU ..(((..((((((.(....).))))))........(((((..((..(((((...((.......))....))))).))..))))))))........................... ( -23.90, z-score = -1.90, R) >droEre2.scaffold_4929 834850 114 + 26641161 AAUACUUUCCUUCUAUAAUCCGAAAGGUACAUCAACUGCAAUGCAUUUGGAACUGCAAGUCGCGCUCUUUCCGACGCUCUGCAGGUAAGACAAACAUAAUUUCAUUGCACAAUU ..(((..............((....))........(((((..((..((((((..((.......))...)))))).))..))))))))........................... ( -21.20, z-score = -0.66, R) >consensus AAUACUUCCUUUCUGAAAUCCGAAAGGUACAUCAACUGCAAUGCAUUCGGAACUGCAAGUCGCGCUCUUUCCGACGCUCUGCAGGUAAAAUAAACAUAUUAUCAGUGCUCAAUU ..(((..((((((........))))))........(((((..((..((((((..((.......))...)))))).))..))))))))........................... (-22.58 = -22.86 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:06:52 2011