| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,317,681 – 19,317,776 |
| Length | 95 |
| Max. P | 0.641954 |
| Location | 19,317,681 – 19,317,776 |
|---|---|
| Length | 95 |
| Sequences | 10 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 67.89 |
| Shannon entropy | 0.57487 |
| G+C content | 0.64931 |
| Mean single sequence MFE | -32.68 |
| Consensus MFE | -19.89 |
| Energy contribution | -19.90 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.07 |
| Mean z-score | -0.61 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.641954 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19317681 95 + 27905053 ----GCUGGGUCACUGCCAAUGCCAUGCGGACGAUUAAGCAGGGGUGCGGCCCCAAAAU------------------CCCAAAUCCCAGUGAUGACGCCCACCCAGCCGGCCCAGUG-- ----((((((((.((((...((((....)).)).....))))(((((.(((......((------------------(.(........).)))...))))))))....)))))))).-- ( -34.70, z-score = -0.92, R) >droSim1.chr3R 19136990 95 + 27517382 ----GCUGGGUCACUGCCAAUGCCAUGCGAACGAUGAAGCAGGGGUGCGGCCUCAAAAU------------------CCCAAAUCCCAGCGAUGACGCCCACCCAGCCGGCCCAGUG-- ----((((((((.((((......(((.(....))))..))))(((((.(((.(((...(------------------(.(........).))))).))))))))....)))))))).-- ( -34.00, z-score = -1.02, R) >droSec1.super_0 19680759 95 + 21120651 ----GCUGGGUCACUGCCAAUGCCAUGCGAACGAUGAAGCAGGGGUGCGGCCUCAAAAU------------------CCCAAAUCCCAGCGAUGACGCCCACCCAGCCGGCCCAGUG-- ----((((((((.((((......(((.(....))))..))))(((((.(((.(((...(------------------(.(........).))))).))))))))....)))))))).-- ( -34.00, z-score = -1.02, R) >droYak2.chr3R 20201691 98 + 28832112 ----GCUGGGUCACUGCCAAUGCCAUGCGGACGAUGAAGCUGGGGUGCGGCCCCAAAAAA---------------AACCCAAAUCCCAGCGAUGACGCCCACCCAGCCGGCCCAGUG-- ----((((((((.(((.....((...))((.((.....((((((((..((..........---------------...))..)))))))).....)).))...)))..)))))))).-- ( -34.42, z-score = -0.80, R) >droEre2.scaffold_4820 1740295 84 - 10470090 ----GCUGGGUCACUGCCAAUGCCAAA-GCA----------GGGGUGCGGCCCCGAAAU------------------CCCAAGUCCCAGCGAUGACGCCCACCCAGCCGGCCCAGUG-- ----((((((((.((((..........-)))----------)(((((.(((...(....------------------..)..(((........)))))))))))....)))))))).-- ( -33.90, z-score = -1.73, R) >droAna3.scaffold_13340 3464040 104 - 23697760 ----GGUGGGUCACUGCCAAUGCCACGCAAAA---------GGGGUGCGGCUGCGCCGGCGAUUGCGACUGUGGCUCCAAAAAUCCCAGCAACACCGCCCACCCAGCCGGCCCAGUG-- ----((..(....)..)).......((((...---------....))))((((.((((((....(((..(((.(((...........))).))).))).......)))))).)))).-- ( -34.90, z-score = 1.88, R) >dp4.chr2 2803650 85 + 30794189 GCUGGCCGGGUCACUGCCAAUGCUACGCAGAA---------GGGGUGCGGC-----------------------CCCAAAAAAUCCAACCACUGACGCCCACCCAACUGGCCCAGUG-- (((((((((....((((.........))))..---------.(((((.(((-----------------------..((..............))..))))))))..)))).))))).-- ( -30.14, z-score = -0.68, R) >droPer1.super_7 2896998 85 - 4445127 GCUCGCCGGGUCACUGCCAAUGCUACGCAGAA---------GGGGUGCGGC-----------------------CCCAAAAAAUCCAACCACUGACGCCCACCCAACUGGCCCAGUG-- ...(((.((((((((((.........))))..---------.(((((.(((-----------------------..((..............))..))))))))...)))))).)))-- ( -28.14, z-score = -0.73, R) >droWil1.scaffold_181130 9369873 76 + 16660200 ----GCUGGGUCACUGCCAAUGCUACGCAGA----------GGGGUGCGGCUCUA----------------------GUCACUCUG-----AUGACGCCCACCCAGCUAGCCCAGUG-- ----(((((((..((((.........)))).----------.(((((.(((....----------------------((((.....-----.)))))))))))).....))))))).-- ( -31.60, z-score = -1.37, R) >droMoj3.scaffold_6540 2431905 79 - 34148556 ----GCUGGGUCGUUGCCAAUGCCACGCAUAC---------AGGGUGCGGCCAGG----------------------CCCAGGCCU-----ACGACGCCCACCUCGUUGGCCCCCGCCG ----((.(((.....((((((((...))....---------.(((((((...(((----------------------(....))))-----.)).))))).....))))))))).)).. ( -31.00, z-score = 0.33, R) >consensus ____GCUGGGUCACUGCCAAUGCCACGCAGAC_________GGGGUGCGGCCCCAAAA___________________CCCAAAUCCCAGCGAUGACGCCCACCCAGCCGGCCCAGUG__ .......(((((...((....))...................(((((.(((.............................................))))))))....)))))...... (-19.89 = -19.90 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:38:11 2011