Locus 11195

Sequence ID dm3.chr3R
Location 19,306,736 – 19,306,827
Length 91
Max. P 0.774089
window15380

overview

Window 0

Location 19,306,736 – 19,306,827
Length 91
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 92.24
Shannon entropy 0.12961
G+C content 0.51725
Mean single sequence MFE -30.28
Consensus MFE -26.56
Energy contribution -26.76
Covariance contribution 0.20
Combinations/Pair 1.07
Mean z-score -1.69
Structure conservation index 0.88
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.65
SVM RNA-class probability 0.774089
Prediction RNA
WARNING Out of training range. z-scores are NOT reliable.

Download alignment: ClustalW | MAF

>dm3.chr3R 19306736 91 - 27905053
CAAGACUGGCAGCCAUGUCCAUGUCAUCAUCAUCAUCGUCUGCACAGCAGCAUUUUGUUGC------UUUGGCUUUCGGUGGUGGUGUCGUCUCGUG
...((((((((....)).))).)))..(((((((((((...((..((((((.....)))))------)...))...))))))))))).......... ( -33.30, z-score =  -3.02, R)
>droSim1.chr3R 19127721 97 - 27517382
CAAGACUGGCAGCCAUGUCCAUGUCAUCAUCAUCAUCGUCUGCACAGCAGCAUUUUGUUGCUUUGGCUUUGGCUUUCGGUGGUGGUGUCGUCUCGUG
..(((((((((....)).))).(.(((((((((((..(((.((..((((((.....))))))...))...)))..).)))))))))).))))).... ( -32.10, z-score =  -1.79, R)
>droSec1.super_0 19669807 97 - 21120651
CAAGACUGGCAGCCAUGUCCAUGUCAUCAUCAUCAUCGUCUGCACAGCAGCAUUUUGUUGCUUUGGCUUUGGCUUUCGGUGGUGGUGUCGUCUCGUG
..(((((((((....)).))).(.(((((((((((..(((.((..((((((.....))))))...))...)))..).)))))))))).))))).... ( -32.10, z-score =  -1.79, R)
>droYak2.chr3R 20190726 88 - 28832112
CAAGACUGGCAGCCAUGUCCAUGUCAUCAUCAUCAUCGUCUGCACAGCGGCAUUUUGUUGCU-----UUUGGU----GGUUGUGGUGUCGUCUCGUG
..(((((((((....)).))).(.((((((.(((((((.......((((((.....))))))-----..))))----))).)))))).))))).... ( -25.30, z-score =  -0.51, R)
>droEre2.scaffold_4820 1729370 91 + 10470090
CAAGACUGGCAGCCAUGUCCAUGUCAUCAUCAUCAUCGUCUGCACAGCGGCAUUUUGUUGC------UUUGGCUUUCGUUGGUGGUGUCGUCCCGUG
...((((((((....)).))).)))..((((((((.((...((..((((((.....)))))------)...))...)).)))))))).......... ( -28.60, z-score =  -1.34, R)
>consensus
CAAGACUGGCAGCCAUGUCCAUGUCAUCAUCAUCAUCGUCUGCACAGCAGCAUUUUGUUGCU_____UUUGGCUUUCGGUGGUGGUGUCGUCUCGUG
...((((((((....)).))).)))..(((((((((((...((.(((((((.....)))))........))))...))))))))))).......... (-26.56 = -26.76 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:38:10 2011