| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,303,585 – 19,303,735 |
| Length | 150 |
| Max. P | 0.809247 |
| Location | 19,303,585 – 19,303,735 |
|---|---|
| Length | 150 |
| Sequences | 5 |
| Columns | 150 |
| Reading direction | reverse |
| Mean pairwise identity | 94.38 |
| Shannon entropy | 0.09808 |
| G+C content | 0.30967 |
| Mean single sequence MFE | -32.18 |
| Consensus MFE | -24.50 |
| Energy contribution | -24.94 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.50 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.809247 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19303585 150 - 27905053 CAUAAAAGCGGCAAUAAAAUGUUUAUAUCGACAUAAGCCUACGAAAUCAGAGCAGCAUUUGAUGAAUAUAAACAUUAGGUGAAAACUUGAAUUUGCCAUAAUAACUUGAACUCGUUAAAAGUUUGAGUGAAAAAAACUCAAAUUUUUUUC .........(((((.....(((((((((((...........))).((((((......))))))...))))))))((((((....))))))..)))))................(..((((((((((((.......))))))))))))..) ( -32.90, z-score = -3.12, R) >droEre2.scaffold_4820 1724286 149 + 10470090 CAUAAAAGCGGCAAUAAACUGUUUAUAUUGACAUAAGCAUACGAAAUUAGAGCGGUAUUUGAUGAAUAUAAACAUUAGGUGAAAACUUGAAUUUGCCAUAAUAACUUGAACUCGUUAAAUGCUUGAGUG-AACAAACUGAAAUUGGUUUC (((..(((((((((.....((((((((((..(((....((((............))))...)))))))))))))((((((....))))))..)))))....((((........))))...))))..)))-...(((((......))))). ( -29.40, z-score = -1.67, R) >droYak2.chr3R 20187409 149 - 28832112 CAUAAAAGCGGCCAUAAAAUGUUUAUAUUGACAUAAGCAUACGAAAUCAGAGCAGCUUAUGAUGAAUAUAAACAUUAGGUGAAAACUUGAAUUUGCCAUCAUAACUUGAACUCGUUAAAUGCUUGAGUG-AACAAACUCAAAUUUGUUUC .....(((((((.......((((((((((.((((((((................))))))).).))))))))))((((((....))))))....)))....((((........))))...))))((((.-.....))))........... ( -35.59, z-score = -3.21, R) >droSec1.super_0 19666654 149 - 21120651 CAUAAAAGCGGCAAUAAAAUGUUUAUAUCGACAUAAGCAUACGAAAUCAGAGCAGCUUUUGAUGAAUAUAAACAUUAGGUGAAAACUUGAAUUUGCCAUAAUAACUUGAACUCGUUAAAAGCUUGAGUG-AACAAACUCAAAUUGGUUUC ..................((((((((......))))))))..((((((((....(((((((((((.........((((((....))))))......((........))...)))))))))))((((((.-.....)))))).)))))))) ( -34.20, z-score = -2.96, R) >droSim1.chr3R 19124601 149 - 27517382 CAUAAAAGCAGCAAUAAAAUGUUUAUAUCGACAUAAGCAUACGAAAUCAGAGCAGCAUUUGAUGAAUAUAAACAUUAGGUGAAAACUUGAAUUUGCCAUAAUAACUUGAACUCGUUAAAAGCCUGAGUG-AACAAACUCAAAUUGGUUUC ..................((((((((......))))))))..((((((((....((.((((((((.........((((((....))))))......((........))...)))))))).)).(((((.-.....)))))..)))))))) ( -28.80, z-score = -1.51, R) >consensus CAUAAAAGCGGCAAUAAAAUGUUUAUAUCGACAUAAGCAUACGAAAUCAGAGCAGCAUUUGAUGAAUAUAAACAUUAGGUGAAAACUUGAAUUUGCCAUAAUAACUUGAACUCGUUAAAAGCUUGAGUG_AACAAACUCAAAUUGGUUUC .....(((((((((.....(((((((((((...........))).((((((......))))))...))))))))((((((....))))))..)))))....((((........))))...))))((((.......))))........... (-24.50 = -24.94 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:38:09 2011