| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,295,573 – 19,295,673 |
| Length | 100 |
| Max. P | 0.855347 |
| Location | 19,295,573 – 19,295,673 |
|---|---|
| Length | 100 |
| Sequences | 11 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 75.90 |
| Shannon entropy | 0.46114 |
| G+C content | 0.34264 |
| Mean single sequence MFE | -19.15 |
| Consensus MFE | -11.60 |
| Energy contribution | -11.55 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.855347 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19295573 100 + 27905053 -----CUGGGGAUCUCGUGACUUGCGUUUCGCAAUUGUGAGAAUCGAGUAUUAAAUAAUUCUUUGCAUAUUUAUUUAUAAAC-AUUAUUCCUGCCUCU-----UCUUCACU -----..((((.(((((..(.(((((...))))))..)))))...(((((.(((((((............))))))).....-..)))))...)))).-----........ ( -18.90, z-score = -1.35, R) >droSim1.chr3R 19116127 105 + 27517382 -----CUGGGGAUCUCGUGACUUGCGUUUCGCAAUUGUGAGAAUCGAGUAUUAAAUAAUUCUUUGCAUAUUUAUUUAUAAAC-AUUAUUCCUGCCUCUCUUCUUCUUCACU -----..((((.(((((..(.(((((...))))))..)))))...(((((.(((((((............))))))).....-..)))))...)))).............. ( -18.90, z-score = -1.32, R) >droSec1.super_0 19658679 104 + 21120651 -----CUGGGGAUCUCAUGACUUGCGUUUCGCAAUUGUGAGAAUCGAGUAUUAAAUAAUUCUUUGCAUAUUUAUUUAUAAAC-AUUAUUCCUGCCUCU-UUCUUCUUCACU -----..((((.(((((..(.(((((...))))))..)))))...(((((.(((((((............))))))).....-..)))))...)))).-............ ( -19.60, z-score = -1.75, R) >droYak2.chr3R 20179168 100 + 28832112 -----CCGGGGAUCUCGUGACUUGCGUUUCGCAAUUGUGAGAAUCGAGUAUUAAAUAAUUCUUUGCAUAUUUAUUUAUAAGC-AUUAUUCCUGCCUCU-----UUUUCAUU -----.(((((((((((..(.(((((...))))))..)))))...((((........))))..(((.(((......))).))-)...)))))).....-----........ ( -20.80, z-score = -1.42, R) >droEre2.scaffold_4820 1716122 100 - 10470090 -----CUGGGGAUCUCGUGACUUGCGUUCCGCAAUUGUGAGAAUCGAGUAUUAAAUAAUUCUUUGCAUAUUUAUUUAUAAAC-AUUAUUCCUGCCUCU-----UUUUUAUU -----..((((.(((((..(.(((((...))))))..)))))...(((((.(((((((............))))))).....-..)))))...)))).-----........ ( -18.90, z-score = -1.36, R) >droAna3.scaffold_13340 3440262 100 - 23697760 -----CUUGGGAUCUCGUGACUUGCGUUUCGCAAUUGUGAGAAUCGAGAAUUAAAUAAAUCUUUGCAUAUUUAUUUGUAAAC-AUUAAUGCUGCCACU-----UUUUCAUU -----(((((..(((((..(.(((((...))))))..))))).))))).........(((.((((((........)))))).-)))............-----........ ( -19.80, z-score = -1.07, R) >dp4.chr2 2780822 87 + 30794189 ---CUGCGGGGAUCUCGUGACUUGCGUUUCGCAAUUGUGAGAAU-------UAAAUAAUUCUUUGCAUAUUUAUUUCUAAAC-AUUAUCGCUGGCUAU------------- ---.(((((((((((((..(.(((((...))))))..)))))..-------........))))))))...............-...............------------- ( -17.90, z-score = -0.92, R) >droPer1.super_7 2874058 87 - 4445127 ---CUGCGGGGAUCUCGUGACUUGCGUUUCGCAAUUGUGAGAAU-------UAAAUAAUUCUUUGCAUAUUUAUUUCUAAAC-AUUAUCGCUGGCUAU------------- ---.(((((((((((((..(.(((((...))))))..)))))..-------........))))))))...............-...............------------- ( -17.90, z-score = -0.92, R) >droVir3.scaffold_13047 8928040 86 + 19223366 ------CUGGAAUCUCGUGACUUGCGUUUCGCAAUUGUGAGAAU-------UAAAUAAUUCUUUGCAUAUUUAUUUGCAAGUGGCUUUUGU-CAUUUUAU----------- ------......(((((..(.(((((...))))))..)))))..-------...........(((((........)))))(((((....))-))).....----------- ( -20.10, z-score = -2.16, R) >droMoj3.scaffold_6540 2411322 93 - 34148556 CUGGAAUCGGAAUCUCGUGACUUGUGUUUCGCAAUUGUGAGAAU-------UAAAUAAUUCUUUGCAUAUUUAUUUGCAAGUGACUUUUGCACACUUUAU----------- ..(((((..((.(((((..(.(((((...))))))..))))).)-------).....)))))(((((........)))))(((.(....)))).......----------- ( -17.90, z-score = -0.73, R) >droGri2.scaffold_15074 7038176 86 - 7742996 ------CUGAAAUCUCGUGACUUGCGUUUUGCUAUUGUGAGAAU-------UAAAUAAUUCUUUUCUCACAUAUUUGCAAUUGGCUGUUGC-CUUUUUAU----------- ------.(((((....(..((..((...((((...((((((((.-------............)))))))).....))))...)).))..)-..))))).----------- ( -19.92, z-score = -3.37, R) >consensus _____CUGGGGAUCUCGUGACUUGCGUUUCGCAAUUGUGAGAAUCGAG_AUUAAAUAAUUCUUUGCAUAUUUAUUUAUAAAC_AUUAUUGCUGCCUCU_____U_UU_A_U ............(((((..(.(((((...))))))..))))).........(((((((............))))))).................................. (-11.60 = -11.55 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:38:07 2011