| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,286,300 – 19,286,392 |
| Length | 92 |
| Max. P | 0.905467 |
| Location | 19,286,300 – 19,286,392 |
|---|---|
| Length | 92 |
| Sequences | 7 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 62.75 |
| Shannon entropy | 0.68041 |
| G+C content | 0.37098 |
| Mean single sequence MFE | -15.05 |
| Consensus MFE | -4.66 |
| Energy contribution | -5.66 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.18 |
| SVM RNA-class probability | 0.905467 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19286300 92 - 27905053 ---------UAAAAGUAAGACAGAAAAAAUAAAAUAUAGACAAAAAAAAAAAACG-CCUGUCCCGA----CUAAACUGCGAAUGCAAUCGCAAUCGCAAUGAAUUU ---------....(((..(((((................................-.)))))...)----))....(((((.(((....))).)))))........ ( -15.81, z-score = -3.78, R) >droSim1.chr3R 19106253 85 - 27517382 ---------UAAAAGUAAGACAG-AAAAAUUAAAUAUAG------AAAAAAAACG-CCUGUCCCGA----CUAAACUGCGAAUGCAAUCGCAAUCGCAAUGAAUUU ---------....(((..(((((-...............------..........-.)))))...)----))....(((((.(((....))).)))))........ ( -16.07, z-score = -3.54, R) >droSec1.super_0 19649405 85 - 21120651 ---------UAAAAGUAAGACAG-AAAAAUAAAAUAUAG------AAAAAAAACG-CCUGUCCCGA----CUAAACUGCGAAUGCAAUCGCAAUCGCAAUGAAUUU ---------....(((..(((((-...............------..........-.)))))...)----))....(((((.(((....))).)))))........ ( -16.07, z-score = -3.78, R) >droYak2.chr3R 20169657 100 - 28832112 CAAAAGUAAGACGGAAAAAUACAAAAAAACAAAAAAUAU-UUAGAAAAAAAAACG-CCUGUACCGA----CUAAGCUGCGAAUGCAAUCGCAAUCGCAAUGAAUUU ....(((...((((.........................-...............-.))))....)----))....(((((.(((....))).)))))........ ( -12.48, z-score = -0.86, R) >droAna3.scaffold_13340 3430017 75 + 23697760 ------------------------CAAAACUAAAGGUG---GAAUAAAAGCAACGCCCUGGUCGGC----CUAAACUGCGAAUGCAAUCGCAAUCGCCAUGAAUUU ------------------------.........((((.---((......((...)).....)).))----)).....((((.(((....))).))))......... ( -15.50, z-score = -0.26, R) >droPer1.super_7 2862933 93 + 4445127 ------------UCAGACUCGGCCCAAAACCAAAAAAAG-ACAACAACAACUAAACUAUGUAGAGAAACGCCCCAGUCCAACUGGCAUUGCAAUCGCAAUGAAUUU ------------.....(((((.......))........-.........((........)).))).......((((.....))))((((((....))))))..... ( -14.30, z-score = -1.28, R) >dp4.chr2 2769704 93 - 30794189 ------------UCAGACUCGGCCCAAAACCAAAAAAAG-ACAACAACAACUAAACUGUGUAGAGAAACGCCCCAGUCCAACUGGCAUUGCAAUCGCAAUGAAUUU ------------.....(((((.......))........-...(((.((.......))))).))).......((((.....))))((((((....))))))..... ( -15.10, z-score = -0.86, R) >consensus __________A_AAAUAAGACAG_AAAAACAAAAAAUAG___AA_AAAAAAAACG_CCUGUACCGA____CUAAACUGCGAAUGCAAUCGCAAUCGCAAUGAAUUU ............................................................................(((((.(((....))).)))))........ ( -4.66 = -5.66 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:38:05 2011